RSKR_0000492900 (Rhabditophanes kr3021)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 RSKR_0000492900 T155892_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.765 0.781
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.765 0.781
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.765 0.781
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.765 0.781
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.761 0.763
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.761 0.763
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.761 0.763
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
RSKR_0000492900.1 C2H2 ZF 137 159
RSKR_0000492900.1 C2H2 ZF 168 190
RSKR_0000492900.1 C2H2 ZF 194 216
RSKR_0000492900.1 C2H2 ZF 222 244
RSKR_0000492900.1 C2H2 ZF 250 271

Links

Other C2H2 ZF family TFs
Other Rhabditophanes kr3021 TFs

149 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R015941 Calypte anna Aan_R015941 N
Afo_R013743 Aptenodytes forsteri Afo_R013743 N
Brh_R002873 Buceros rhinoceros Brh_R002873 N
ENSAMEG00000016451 Ailuropoda melanoleuca ENSAMEG00000016451 N
ENSAPLG00000015265 Anas platyrhynchos ENSAPLG00000015265 N
ENSCSAG00000005755 Chlorocebus sabaeus ENSCSAG00000005755 N
ENSFALG00000003312 Ficedula albicollis ENSFALG00000003312 N
ENSLACG00000005412 Latimeria chalumnae ENSLACG00000005412 N
ENSMEUG00000013235 Macropus eugenii ENSMEUG00000013235 N
ENSMPUG00000000182 Mustela putorius furo ENSMPUG00000000182 N
ENSNLEG00000007765 Nomascus leucogenys ENSNLEG00000007765 N
ENSOARG00000017642 Ovis aries ENSOARG00000017642 N
ENSP00000385006-D1 Bos grunniens ENSP00000385006-D1 N
ENSPANG00000020992 Papio anubis ENSPANG00000020992 N
ENSPPYG00000013356 Pongo abelii ENSPPYG00000013356 N
ENSPSIG00000006771 Pelodiscus sinensis ENSPSIG00000006771 N
ENSSHAG00000002590 Sarcophilus harrisii ENSSHAG00000002590 N
ENSSTOG00000015998 Ictidomys tridecemlineatus ENSSTOG00000015998 N
ENSTSYG00000002410 Tarsius syrichta ENSTSYG00000002410 N
Gfo_R001811 Geospiza fortis Gfo_R001811 N
Pvit_12887 Pogona vitticeps Pvit_12887 N
THAP4 Pteropus vampyrus ENSPVAG00000016841 N
THAP4 Anolis carolinensis ENSACAG00000000876 N
THAP4 Bos taurus ENSBTAG00000013253 N
THAP4 Canis familiaris ENSCAFG00000013012 N
THAP4 Choloepus hoffmanni ENSCHOG00000003231 N
THAP4 Callithrix jacchus ENSCJAG00000000540 N
THAP4 Cavia porcellus ENSCPOG00000022107 N
THAP4 Tursiops truncatus ENSTTRG00000017281 N
THAP4 Equus caballus ENSECAG00000000252 N
THAP4 Taeniopygia guttata ENSTGUG00000005955 N
THAP4 Tupaia belangeri ENSTBEG00000003154 N
THAP4 Erinaceus europaeus ENSEEUG00000008009 N
THAP4 Echinops telfairi ENSETEG00000009284 N
Thap4 Rattus norvegicus ENSRNOG00000018351 N
THAP4 Myotis lucifugus ENSMLUG00000007192 N
THAP4 Pan troglodytes ENSPTRG00000013127 N
THAP4 Felis catus ENSFCAG00000014280 N
THAP4 Homo sapiens ENSG00000176946 N
THAP4 Procavia capensis ENSPCAG00000003695 N
THAP4 Gallus gallus ENSGALG00000006283 N
THAP4 Otolemur garnettii ENSOGAG00000024821 N
THAP4 Oryctolagus cuniculus ENSOCUG00000011164 N
THAP4 Gorilla gorilla ENSGGOG00000015684 N
THAP4 Ornithorhynchus anatinus ENSOANG00000009842 N
THAP4 Loxodonta africana ENSLAFG00000018001 N
Thap4 Mus musculus ENSMUSG00000026279 N
THAP4 Microcebus murinus ENSMICG00000016452 N
THAP4 Macaca mulatta ENSMMUG00000005662 N