SMUV_0000843501 (Syphacia muris)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 SMUV_0000843501 T156445_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.763 0.781
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.763 0.781
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.763 0.781
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.763 0.781
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.761 0.772
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.761 0.772
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.761 0.772
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.761 0.772
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.760 0.781
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.760 0.781
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.760 0.781
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMUV_0000843501-mRNA-1 C2H2 ZF 63 85
SMUV_0000843501-mRNA-1 C2H2 ZF 94 116
SMUV_0000843501-mRNA-1 C2H2 ZF 120 142
SMUV_0000843501-mRNA-1 C2H2 ZF 148 170
SMUV_0000843501-mRNA-1 C2H2 ZF 176 197

Links

Other C2H2 ZF family TFs
Other Syphacia muris TFs

178 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29706.m001295 Ricinus communis 29706.m001295 N
AMTR_s00024p00216510 Amborella trichopoda AMTR_s00024p00216510 N
Aquca_076_00106 Aquilegia coerulea Aquca_076_00106 N
BRADI3G57300 Brachypodium distachyon BRADI3G57300 N
cassava159.valid.m1 Manihot esculenta cassava159.valid.m1 N
cassava31568.valid.m1 Manihot esculenta cassava31568.valid.m1 N
Ca_10028 Cicer arietinum Ca_10028 N
Ciclev10025094m.g Citrus clementina Ciclev10025094m.g N
Cla015802 Citrullus lanatus Cla015802 N
Eucgr.J00905 Eucalyptus grandis Eucgr.J00905 N
Eucgr.J02823 Eucalyptus grandis Eucgr.J02823 N
evm.TU.supercontig_25.106 Carica papaya evm.TU.supercontig_25.106 N
F775_05862 Aegilops tauschii F775_05862 N
gene07405-v1.0-hybrid Fragaria vesca gene07405-v1.0-hybrid N
GLYMA07G04160 Glycine max GLYMA07G04160 N
GLYMA16G00870 Glycine max GLYMA16G00870 N
Gorai.011G058300 Gossypium raimondii Gorai.011G058300 N
GSMUA_Achr5G24660_001 Musa acuminata GSMUA_Achr5G24660_001 N
MDP0000261067 Malus domestica MDP0000261067 N
MDP0000279204 Malus domestica MDP0000279204 N
mgf013194m Mimulus guttatus mgf013194m N
MLOC_56874 Hordeum vulgare MLOC_56874 N
MTR_8g020330 Medicago truncatula MTR_8g020330 N
orange1.1g006062m.g Citrus sinensis orange1.1g006062m.g N
PDK_20s1327961g002 Phoenix dactylifera PDK_20s1327961g002 N
PDK_20s1505221g001 Phoenix dactylifera PDK_20s1505221g001 N
PGSC0003DMG400002481 Solanum tuberosum PGSC0003DMG400002481 N
PK02666.1 Cannabis sativa PK02666.1 N
Pm013286 Prunus mume Pm013286 N
POPTR_0001s17020 Populus trichocarpa POPTR_0001s17020 N
POPTR_0003s06240 Populus trichocarpa POPTR_0003s06240 N
PRUPE_ppa003052mg Prunus persica PRUPE_ppa003052mg N
SapurV1A.0002s0820 Salix purpurea SapurV1A.0002s0820 N
SapurV1A.0177s0370 Salix purpurea SapurV1A.0177s0370 N
SapurV1A.5380s0010 Salix purpurea SapurV1A.5380s0010 N
TCM_029115 Theobroma cacao TCM_029115 N
Thhalv10007199m.g Eutrema salsugineum Thhalv10007199m.g N
TRAES3BF079700090CFD_g Triticum aestivum TRAES3BF079700090CFD_g N
Traes_3AL_B71F3F028 Triticum aestivum Traes_3AL_B71F3F028 N
Traes_3DL_A631E1F0C Triticum aestivum Traes_3DL_A631E1F0C N
TRIUR3_15439 Triticum urartu TRIUR3_15439 N
VIT_06s0004g02520 Vitis vinifera VIT_06s0004g02520 N
VIT_09s0002g01480 Vitis vinifera VIT_09s0002g01480 N