SVE_0901200 (Strongyloides venezuelensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 SVE_0901200 T157418_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
sens
M03666_2.00 		Drosophila melanogaster
TGCWSTGATTTATY
RATAAATCASWGCA		 SELEX
Nitta et al.(2015)
sens_1 		0.790 0.848
sens
M06056_2.00 		Drosophila melanogaster
AAATCACDGC
GCHGTGATTT		 B1H
Zhu et al.(2011)
sens_SANGER_10_FBgn0002573 		0.790 0.848
sens
M06057_2.00 		Drosophila melanogaster
NNNNAAATCACRGCH
DGCYGTGATTTNNNN		 B1H
Zhu et al.(2011)
sens_SOLEXA_5_FBgn0002573 		0.790 0.848
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SVE_0901200.1 C2H2 ZF 221 243
SVE_0901200.1 C2H2 ZF 249 271
SVE_0901200.1 C2H2 ZF 277 299
SVE_0901200.1 C2H2 ZF 305 328

Links

Other C2H2 ZF family TFs
Other Strongyloides venezuelensis TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ALUE_0001931801 Ascaris lumbricoides ALUE_0001931801 N
ASU_11889 Ascaris suum ASU_11889 N
Bm10737 Brugia malayi Bm10737 N
BTMF_0000904601 Brugia timori BTMF_0000904601 N
BXY_1648300 Bursaphelenchus xylophilus BXY_1648300 N
DME_0000639401 Dracunculus medinensis DME_0000639401 N
EEL_0000994401 Elaeophora elaphi EEL_0000994401 N
GLOINDRAFT_30433 Rhizophagus irregularis GLOINDRAFT_30433 N
L596_g6816 Steinernema carpocapsae L596_g6816 N
L892_g20462 Steinernema scapterisci L892_g20462 N
LOAG_07813 Loa loa LOAG_07813 N
MhA1_Contig389.frz3.gene3 Meloidogyne hapla MhA1_Contig389.frz3.gene3 N
Minc08472 Meloidogyne incognita Minc08472 N
nAv.1.0.1.g07983 Acanthocheilonema viteae nAv.1.0.1.g07983 N
nDi.2.2.2.g05271 Dirofilaria immitis nDi.2.2.2.g05271 N
nLs.2.1.2.g07965 Litomosoides sigmodontis nLs.2.1.2.g07965 N
PTRK_0000146000 Parastrongyloides trichosuri PTRK_0000146000 N
PTRK_0000295600 Parastrongyloides trichosuri PTRK_0000295600 N
RSKR_0001028000 Rhabditophanes kr3021 RSKR_0001028000 N
SMUV_0000949901 Syphacia muris SMUV_0000949901 N
SPAL_0000268400 Strongyloides papillosus SPAL_0000268400 N
SSTP_0000600400 Strongyloides stercoralis SSTP_0000600400 N
SVE_1898000 Strongyloides venezuelensis SVE_1898000 N
TCLT_0001028201 Thelazia callipaeda TCLT_0001028201 N
TCNE_0001183201 Toxocara canis TCNE_0001183201 N
WBGene00246118 Onchocerca volvulus WBGene00246118 N
WUBG_09447 Wuchereria bancrofti WUBG_09447 N