Pavir.Ba00948 (Panicum virgatum)
CG-1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03859 (CG-1) IPR005559 Pavir.Ba00948 T163575_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q2WEL1_ORYSA
M10406_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBT_01 		0.912 0.912
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ba00948.1.p CG-1 33 147

Links

Other CG-1 family TFs
Other Panicum virgatum TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_003_00568 Aquilegia coerulea Aquca_003_00568 I 0.702
BRADI1G27170 Brachypodium distachyon BRADI1G27170 I 0.930
Ca_02997 Cicer arietinum Ca_02997 I 0.719
Ciclev10004273m.g Citrus clementina Ciclev10004273m.g I 0.719
Eucgr.H04035 Eucalyptus grandis Eucgr.H04035 I 0.702
evm.TU.supercontig_929.1 Carica papaya evm.TU.supercontig_929.1 I 0.702
GLYMA07G37090 Glycine max GLYMA07G37090 I 0.702
GLYMA09G04310 Glycine max GLYMA09G04310 I 0.702
Gorai.011G198600 Gossypium raimondii Gorai.011G198600 I 0.775
GRMZM2G032336 Zea mays GRMZM2G032336 I 0.974
GSMUA_Achr8G10490_001 Musa acuminata GSMUA_Achr8G10490_001 I 0.772
MDP0000164873 Malus domestica MDP0000164873 I 0.719
MDP0000167705 Malus domestica MDP0000167705 I 0.719
MDP0000233860 Malus domestica MDP0000233860 I 0.719
mgf012030m Mimulus guttatus mgf012030m I 0.728
MTR_2g034650 Medicago truncatula MTR_2g034650 I 0.702
MTR_4g121840 Medicago truncatula MTR_4g121840 I 0.711
OB07G20740 Oryza brachyantha OB07G20740 I 0.895
OGLUM07G13800 Oryza glumaepatula OGLUM07G13800 I 0.912
OLONG_014480 Oryza longistaminata OLONG_014480 I 0.912
ONIVA07G13300 Oryza nivara ONIVA07G13300 I 0.912
OPUNC07G13630 Oryza punctata OPUNC07G13630 I 0.912
orange1.1g002476m.g Citrus sinensis orange1.1g002476m.g I 0.719
ORUFI07G15090 Oryza rufipogon ORUFI07G15090 I 0.912
OS07G0490200 Oryza sativa OS07G0490200 I 0.912
Pavir.J11066 Panicum virgatum Pavir.J11066 I 1.000
Q2WEL1_ORYSA Oryza sativa Q2WEL1_ORYSA D 0.912
Sb02g033620 Sorghum bicolor Sb02g033620 I 0.974
Si028862m.g Setaria italica Si028862m.g I 0.991
Traes_2AS_4C4190DEB Triticum aestivum Traes_2AS_4C4190DEB I 0.930
Traes_2BS_1A9DB766A Triticum aestivum Traes_2BS_1A9DB766A I 0.816
Traes_2DS_119508A0E Triticum aestivum Traes_2DS_119508A0E I 0.753