CapteG48743 (Capitella teleta)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 CapteG48743 T164329_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YBX1
M04661_2.00 		Homo sapiens
GRTGGWACR
YGTWCCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_HT-SELEX 		0.803 0.803
YBX1
M10411_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q3 		0.803 0.803
YBX1
M10412_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q4 		0.803 0.803
YBX1
M04662_2.00 		Homo sapiens
GRTGKDRCD
HGYHMCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_Methyl-HT-SELEX 		0.803 0.803
NEMVEDRAFT_v1g104083
M01207_2.00 		Nematostella vectensis
NNNDDHRN
NYDHHNNN		 PBM
Lambert et al.(2019)
pTH9768 		0.742 0.742
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CapteP48743 CSD 11 80

Links

Other CSD family TFs
Other Capitella teleta TFs

288 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00044p00042560 Amborella trichopoda AMTR_s00044p00042560 I
AT1G14600 Arabidopsis thaliana AT1G14600 D
AT4G04605 Arabidopsis thaliana AT4G04605 I
BGIOSGA008790 Oryza indica BGIOSGA008790 I
BGIOSGA011527 Oryza indica BGIOSGA011527 I
BGIOSGA016936 Oryza indica BGIOSGA016936 I
BGIOSGA023442 Oryza indica BGIOSGA023442 N
BGIOSGA031479 Oryza indica BGIOSGA031479 I
Bo2g104640 Brassica oleracea Bo2g104640 I
Bo5g019810 Brassica oleracea Bo5g019810 I
Bostr.24340s0004 Boechera stricta Bostr.24340s0004 I
Bostr.7199s0006 Boechera stricta Bostr.7199s0006 I
Bra026202 Brassica rapa Bra026202 I
BRADI1G32370 Brachypodium distachyon BRADI1G32370 N
BRADI5G18590 Brachypodium distachyon BRADI5G18590 N
Cagra.3501s0036 Capsella grandiflora Cagra.3501s0036 I
Cagra.4137s0009 Capsella grandiflora Cagra.4137s0009 I
Carubv10003097m.g Capsella rubella Carubv10003097m.g I
Carubv10010057m.g Capsella rubella Carubv10010057m.g I
Ciclev10018145m.g Citrus clementina Ciclev10018145m.g I
Cla017202 Citrullus lanatus Cla017202 I
F775_02595 Aegilops tauschii F775_02595 N
F775_03870 Aegilops tauschii F775_03870 I
F775_04264 Aegilops tauschii F775_04264 I
F775_04777 Aegilops tauschii F775_04777 I
fgenesh2_kg.1__1592__AT1G14600.1 Arabidopsis lyrata fgenesh2_kg.1__1592__AT1G14600.1 I
GRMZM2G069525 Zea mays GRMZM2G069525 I
GRMZM2G090230 Zea mays GRMZM2G090230 I
GRMZM2G374986 Zea mays GRMZM2G374986 I
GRMZM2G454449 Zea mays GRMZM2G454449 N
GRMZM5G887276 Zea mays GRMZM5G887276 I
GSMUA_Achr7G03510_001 Musa acuminata GSMUA_Achr7G03510_001 I
LPERR02G22340 Leersia perrieri LPERR02G22340 I
LPERR03G02180 Leersia perrieri LPERR03G02180 I
LPERR04G17940 Leersia perrieri LPERR04G17940 I
LPERR06G20200 Leersia perrieri LPERR06G20200 N
LPERR10G13190 Leersia perrieri LPERR10G13190 I
mgf019744m Mimulus guttatus mgf019744m I
MLOC_53840 Hordeum vulgare MLOC_53840 N
MLOC_53958 Hordeum vulgare MLOC_53958 N
MLOC_56821 Hordeum vulgare MLOC_56821 I
MLOC_67081 Hordeum vulgare MLOC_67081 N
MLOC_67085 Hordeum vulgare MLOC_67085 N
OB02G34860 Oryza brachyantha OB02G34860 I
OB03G12320 Oryza brachyantha OB03G12320 I
OB04G28940 Oryza brachyantha OB04G28940 I
OB06G32040 Oryza brachyantha OB06G32040 N
OB10G24340 Oryza brachyantha OB10G24340 I
OBART02G27470 Oryza barthii OBART02G27470 I
OBART03G02370 Oryza barthii OBART03G02370 I
OBART04G21930 Oryza barthii OBART04G21930 I
OBART06G24290 Oryza barthii OBART06G24290 N
OBART10G17270 Oryza barthii OBART10G17270 I
OGLUM02G28020 Oryza glumaepatula OGLUM02G28020 I
OGLUM03G02310 Oryza glumaepatula OGLUM03G02310 I
OGLUM04G21960 Oryza glumaepatula OGLUM04G21960 I
OGLUM06G25550 Oryza glumaepatula OGLUM06G25550 N
OLONG_000346 Oryza longistaminata OLONG_000346 I
OLONG_004539 Oryza longistaminata OLONG_004539 I
OLONG_011732 Oryza longistaminata OLONG_011732 I
OLONG_016687 Oryza longistaminata OLONG_016687 I
OLONG_026929 Oryza longistaminata OLONG_026929 N
OMERI02G26760 Oryza meridionalis OMERI02G26760 I
OMERI03G02220 Oryza meridionalis OMERI03G02220 I
OMERI04G18450 Oryza meridionalis OMERI04G18450 I
OMERI06G24530 Oryza meridionalis OMERI06G24530 N
OMERI10G13750 Oryza meridionalis OMERI10G13750 I
ONIVA02G30300 Oryza nivara ONIVA02G30300 I
ONIVA03G01980 Oryza nivara ONIVA03G01980 I
ONIVA04G20480 Oryza nivara ONIVA04G20480 I
ONIVA06G30620 Oryza nivara ONIVA06G30620 N
ONIVA10G19340 Oryza nivara ONIVA10G19340 I
OPUNC02G25130 Oryza punctata OPUNC02G25130 I
OPUNC03G02160 Oryza punctata OPUNC03G02160 I
OPUNC04G19690 Oryza punctata OPUNC04G19690 I
OPUNC06G22010 Oryza punctata OPUNC06G22010 N
OPUNC10G15550 Oryza punctata OPUNC10G15550 I
orange1.1g043383m.g Citrus sinensis orange1.1g043383m.g I
ORGLA02G0236600 Oryza glaberrima ORGLA02G0236600 I
ORGLA03G0021400 Oryza glaberrima ORGLA03G0021400 I
ORGLA04G0189700 Oryza glaberrima ORGLA04G0189700 I
ORGLA06G0204400 Oryza glaberrima ORGLA06G0204400 N
ORGLA10G0122800 Oryza glaberrima ORGLA10G0122800 I
ORUFI02G28930 Oryza rufipogon ORUFI02G28930 I
ORUFI03G02110 Oryza rufipogon ORUFI03G02110 I
ORUFI04G23540 Oryza rufipogon ORUFI04G23540 I
ORUFI06G26110 Oryza rufipogon ORUFI06G26110 N
ORUFI10G18320 Oryza rufipogon ORUFI10G18320 I
OS04G0566600 Oryza sativa OS04G0566600 I
OS06G0670300 Oryza sativa OS06G0670300 N
Pavir.Aa00827 Panicum virgatum Pavir.Aa00827 I
Pavir.Ab02674 Panicum virgatum Pavir.Ab02674 I
Pavir.Da00200 Panicum virgatum Pavir.Da00200 N
Pavir.Db00422 Panicum virgatum Pavir.Db00422 N
Pavir.Gb01051 Panicum virgatum Pavir.Gb01051 I
Pavir.Ia04483 Panicum virgatum Pavir.Ia04483 I
Pavir.Ib00180 Panicum virgatum Pavir.Ib00180 I
Pavir.J09702 Panicum virgatum Pavir.J09702 I
Pavir.J33581 Panicum virgatum Pavir.J33581 I
Pm010236 Prunus mume Pm010236 I
Sb01g048420 Sorghum bicolor Sb01g048420 I
Sb06g025600 Sorghum bicolor Sb06g025600 I
Sb10g026930 Sorghum bicolor Sb10g026930 N
Si007179m.g Setaria italica Si007179m.g N
Si011884m.g Setaria italica Si011884m.g I
Si019625m.g Setaria italica Si019625m.g I
Si036127m.g Setaria italica Si036127m.g I
Si039234m.g Setaria italica Si039234m.g I
Thhalv10008620m.g Eutrema salsugineum Thhalv10008620m.g I
Traes_1BL_E2629CBC1 Triticum aestivum Traes_1BL_E2629CBC1 I
Traes_7AL_9A1395EC7 Triticum aestivum Traes_7AL_9A1395EC7 I
Traes_7AL_BF6FD97DA Triticum aestivum Traes_7AL_BF6FD97DA N
Traes_7DL_FEA7D3672 Triticum aestivum Traes_7DL_FEA7D3672 N
TRIUR3_34172 Triticum urartu TRIUR3_34172 I