LIN28B (Ochotona princeps)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSOPRG00000006333 T164720_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		1.000 1.000
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		1.000 1.000
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOPRP00000005798 CSD 26 98

Links

Other CSD family TFs
Other Ochotona princeps TFs

144 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG009080.1 Alligator sinensis Alligator_sinensis_CCG009080.1 N
Cmyd_10016724 Chelonia mydas Cmyd_10016724 N
ENSACAG00000024733 Anolis carolinensis ENSACAG00000024733 N
ENSAMEG00000018149 Ailuropoda melanoleuca ENSAMEG00000018149 N
ENSAPLG00000007392 Anas platyrhynchos ENSAPLG00000007392 N
ENSCAFG00000032382 Canis familiaris ENSCAFG00000032382 N
ENSCJAG00000012840 Callithrix jacchus ENSCJAG00000012840 N
ENSCSAG00000003107 Chlorocebus sabaeus ENSCSAG00000003107 N
ENSDNOG00000040837 Dasypus novemcinctus ENSDNOG00000040837 N
ENSDORG00000008940 Dipodomys ordii ENSDORG00000008940 N
ENSFALG00000006492 Ficedula albicollis ENSFALG00000006492 N
ENSMGAG00000007619 Meleagris gallopavo ENSMGAG00000007619 N
ENSMLUG00000029422 Myotis lucifugus ENSMLUG00000029422 N
ENSMPUG00000008220 Mustela putorius furo ENSMPUG00000008220 N
ENSP00000326630-D1 Bos grunniens ENSP00000326630-D1 N
ENSPANG00000005497 Papio anubis ENSPANG00000005497 N
ENSPPYG00000007637 Pongo abelii ENSPPYG00000007637 N
ENSSTOG00000027139 Ictidomys tridecemlineatus ENSSTOG00000027139 N
ENSTGUG00000007708 Taeniopygia guttata ENSTGUG00000007708 N
Myotis_brandtii_ZFPM1_10035266 Myotis brandtii Myotis_brandtii_ZFPM1_10035266 N
Ogr16761 Ophisaurus gracilis Ogr16761 N
Pvit_16331 Pogona vitticeps Pvit_16331 N
Zfpm1 Rattus norvegicus ENSRNOG00000043077 N
ZFPM1 Tursiops truncatus ENSTTRG00000014484 N
ZFPM1 Pteropus vampyrus ENSPVAG00000005587 N
ZFPM1 Otolemur garnettii ENSOGAG00000028472 N
Zfpm1 Mus musculus ENSMUSG00000049577 N
ZFPM1 Gallus gallus ENSGALG00000006099 N
ZFPM1 Homo sapiens ENSG00000179588 N
ZFPM1 Bos taurus ENSBTAG00000015766 N