LIN28B (Taeniopygia guttata)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSTGUG00000012225 T164812_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		0.970 0.970
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		0.970 0.970
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTGUP00000012590 CSD 30 102

Links

Other CSD family TFs
Other Taeniopygia guttata TFs

134 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AB10540.1 Alternaria brassicicola AB10540.1 N 0.000
AUEXF2481DRAFT_450827 Aureobasidium subglaciale AUEXF2481DRAFT_450827 N 0.000
BAUCODRAFT_79827 Baudoinia compniacensis BAUCODRAFT_79827 N 0.000
BDDG_00151 Blastomyces dermatitidis BDDG_00151 N 0.000
COCC4DRAFT_194294 Bipolaris maydis COCC4DRAFT_194294 N 0.000
COCCADRAFT_22008 Bipolaris zeicola COCCADRAFT_22008 N 0.000
COCMIDRAFT_26521 Bipolaris oryzae COCMIDRAFT_26521 N 0.000
COCSADRAFT_147534 Bipolaris sorokiniana COCSADRAFT_147534 N 0.000
COCVIDRAFT_33489 Bipolaris victoriae COCVIDRAFT_33489 N 0.000
fgenesh1_pg.C_scaffold_14000107 Cochliobolus heterostrophus C5 fgenesh1_pg.C_scaffold_14000107 N 0.000
HCBG_00082 Histoplasma capsulatum HCBG_00082 N 0.000
LEMA_P063520.1 Leptosphaeria maculans LEMA_P063520.1 N 0.000
M437DRAFT_74830 Aureobasidium melanogenum M437DRAFT_74830 N 0.000
M438DRAFT_346203 Aureobasidium pullulans M438DRAFT_346203 N 0.000
M7I_2968 Glarea lozoyensis M7I_2968 N 0.000
MPH_08084 Macrophomina phaseolina MPH_08084 N 0.000
PAAG_00749 Paracoccidioides sp lutzii PAAG_00749 N 0.000
PABG_01478 Paracoccidioides brasiliensis PABG_01478 N 0.000
PTRG_08751 Pyrenophora triticirepentis PTRG_08751 N 0.000
PTT_14570 Pyrenophora teres PTT_14570 N 0.000
SEPMUDRAFT_71441 Sphaerulina musiva SEPMUDRAFT_71441 N 0.000
SETTUDRAFT_182079 Setosphaeria turcica SETTUDRAFT_182079 N 0.000
SNOG_03792 Phaeosphaeria nodorum SNOG_03792 N 0.000
SNOG_03792 Stagonospora nodorum SNOG_03792 N 0.000
UCRPA7_1672 Togninia minima UCRPA7_1672 N 0.000