LotgiG159505 (Lottia gigantea)
CSL

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF09271 (LAG1-DNAbind) IPR015351 LotgiG159505 T166192_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RBPJ
M00735_2.00 		Homo sapiens
NNNBTCHCAN
NTGDGAVNNN		 PBM
DelBianco et al.(2010)
GST-CSL_Fig2 		0.794 0.794
RBPJ
M00736_2.00 		Homo sapiens
NNNYTCHCAN
NTGDGARNNN		 PBM
DelBianco et al.(2010)
GST-CSL_Fig4 		0.794 0.794
RBPJ
M00737_2.00 		Homo sapiens
NNNBTCHCAN
NTGDGAVNNN		 PBM
DelBianco et al.(2010)
GST-CSL-NOTCH1 		0.794 0.794
RBPJ
M00738_2.00 		Homo sapiens
NBTCHCAN
NTGDGAVN		 PBM
DelBianco et al.(2010)
GST-NOTCH1_CSL-6His_MAML1 		0.794 0.794
RBPJ
M00739_2.00 		Homo sapiens
NNBTCHCAN
NTGDGAVNN		 PBM
DelBianco et al.(2010)
GST-NOTCH1_CSL-6His 		0.794 0.794
RBPJ
M00740_2.00 		Homo sapiens
NNNYTCYCAN
NTGRGARNNN		 PBM
DelBianco et al.(2010)
GST-NOTCH1_Fig2 		0.794 0.794
RBPJ
M00741_2.00 		Homo sapiens
NNNBTCHCAN
NTGDGAVNNN		 PBM
DelBianco et al.(2010)
MAML1-CSL-GST-NOTCH1_Fig2 		0.794 0.794
RBPJ
M00742_2.00 		Homo sapiens
NDYTCHCAB
VTGDGARHN		 PBM
DelBianco et al.(2010)
MAML1-CSL-GST-NOTCH1_Fig5 		0.794 0.794
RBPJ
M08105_2.00 		Homo sapiens
NNTTCCCABN
NVTGGGAANN		 ChIP-seq
Mathelier et al.(2014)
MA1116.1 		0.794 0.794
RBPJ
M09020_2.00 		Homo sapiens
BTTCCCASVVN
NBBSTGGGAAV		 Misc
Kulakovskiy et al.(2013)
SUH_HUMAN.H11MO.0.A 		0.794 0.794
Rbpj
M09021_2.00 		Mus musculus
NBTTCCCASVV
BBSTGGGAAVN		 Misc
Kulakovskiy et al.(2013)
SUH_MOUSE.H11MO.0.A 		0.794 0.794
RBPJ
M10413_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RBPJK_01 		0.794 0.794
RBPJ
M10414_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RBPJK_Q4 		0.794 0.794
Su(H)
M10415_2.00 		Drosophila melanogaster
VGKTTCYCACRVY
RBYGTGRGAAMCB		 Transfac
Matys et al.(2006)
I$SUH_01 		0.771 0.771
Su(H)
M08455_2.00 		Drosophila melanogaster
HBHNVGKTTCYCACRV
BYGTGRGAAMCBNDVD		 COMPILED
Mathelier et al.(2014)
MA0085.1 		0.771 0.771
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LotgiP159505 CSL 115 245

Links

Other CSL family TFs
Other Lottia gigantea TFs

154 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29738.m001046 Ricinus communis 29738.m001046 I
29917.m002016 Ricinus communis 29917.m002016 I
anac044 Arabidopsis thaliana AT3G01600 N
anac044 Arabidopsis lyrata Al_scaffold_0003_51 N
anac085 Arabidopsis lyrata Al_scaffold_0006_1351 I
anac085 Arabidopsis thaliana AT5G14490 I
Aquca_054_00006 Aquilegia coerulea Aquca_054_00006 I
Bostr.12659s0396 Boechera stricta Bostr.12659s0396 I
Bostr.1460s0050 Boechera stricta Bostr.1460s0050 N
Bostr.2902s0186 Boechera stricta Bostr.2902s0186 I
Bra001000 Brassica rapa Bra001000 N
Bra006257 Brassica rapa Bra006257 I
Cagra.1561s0026 Capsella grandiflora Cagra.1561s0026 N
Cagra.3166s0054 Capsella grandiflora Cagra.3166s0054 I
Carubv10002665m.g Capsella rubella Carubv10002665m.g I
Carubv10014004m.g Capsella rubella Carubv10014004m.g N
cassava12330.valid.m1 Manihot esculenta cassava12330.valid.m1 I
cassava14633.m1 Manihot esculenta cassava14633.m1 I
cassava3690.m1 Manihot esculenta cassava3690.m1 I
chr2.CM0749.410.nc Lotus japonicus chr2.CM0749.410.nc I
Ciclev10015507m.g Citrus clementina Ciclev10015507m.g I
Ciclev10031598m.g Citrus clementina Ciclev10031598m.g I
Cla004701 Citrullus lanatus Cla004701 I
Cla020673 Citrullus lanatus Cla020673 I
Cucsa.011210 Cucumis sativus Cucsa.011210 I
Cucsa.283900 Cucumis sativus Cucsa.283900 I
Eucgr.J02254 Eucalyptus grandis Eucgr.J02254 I
gene03875-v1.0-hybrid Fragaria vesca gene03875-v1.0-hybrid I
GLYMA01G22510 Glycine max GLYMA01G22510 I
GLYMA02G11140 Glycine max GLYMA02G11140 I
GLYMA16G07501 Glycine max GLYMA16G07501 N
GLYMA19G08510 Glycine max GLYMA19G08510 N
GLYMA20G32690 Glycine max GLYMA20G32690 I
Gorai.006G034600 Gossypium raimondii Gorai.006G034600 I
Gorai.007G075300 Gossypium raimondii Gorai.007G075300 I
Gorai.008G186300 Gossypium raimondii Gorai.008G186300 I
GSMUA_Achr3G07330_001 Musa acuminata GSMUA_Achr3G07330_001 I
GSMUA_Achr6G11230_001 Musa acuminata GSMUA_Achr6G11230_001 I
Lus10003668.g Linum usitatissimum Lus10003668.g N
Lus10021708.g Linum usitatissimum Lus10021708.g I
mgf012882m Mimulus guttatus mgf012882m I
mgf018486m Mimulus guttatus mgf018486m I
MTR_1g093670 Medicago truncatula MTR_1g093670 I
MTR_1g093680 Medicago truncatula MTR_1g093680 I
MTR_5g053430 Medicago truncatula MTR_5g053430 I
MTR_7g033320 Medicago truncatula MTR_7g033320 I
orange1.1g014310m.g Citrus sinensis orange1.1g014310m.g I
PDK_20s1306131g001 Phoenix dactylifera PDK_20s1306131g001 I
PGSC0003DMG400000809 Solanum tuberosum PGSC0003DMG400000809 I
PK17141.1 Cannabis sativa PK17141.1 I
PK25812.1 Cannabis sativa PK25812.1 I
Pm015625 Prunus mume Pm015625 I
Pm029010 Prunus mume Pm029010 I
POPTR_0001s35490 Populus trichocarpa POPTR_0001s35490 I
POPTR_0008s11550 Populus trichocarpa POPTR_0008s11550 I
POPTR_0010s13980 Populus trichocarpa POPTR_0010s13980 I
PRUPE_ppa006948mg Prunus persica PRUPE_ppa006948mg I
SapurV1A.0079s0500 Salix purpurea SapurV1A.0079s0500 I
SapurV1A.0304s0050 Salix purpurea SapurV1A.0304s0050 I
SapurV1A.0716s0010 Salix purpurea SapurV1A.0716s0010 I
SapurV1A.1388s0020 Salix purpurea SapurV1A.1388s0020 I
SapurV1A.2846s0020 Salix purpurea SapurV1A.2846s0020 I
Si024889m.g Setaria italica Si024889m.g I
SOG1 Vitis vinifera VIT_01s0011g02990 I
Solyc05g009840.2 Solanum lycopersicum Solyc05g009840.2 I
TCM_011869 Theobroma cacao TCM_011869 I
TCM_016984 Theobroma cacao TCM_016984 I
Thhalv10015728m.g Eutrema salsugineum Thhalv10015728m.g N
Traes_6AL_C14335DC8 Triticum aestivum Traes_6AL_C14335DC8 I
VIT_14s0066g00360 Vitis vinifera VIT_14s0066g00360 I