CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Hsal_09918--XP_397309.1_APIME
(
Harpegnathos saltator
)
CSL
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF09271 (LAG1-DNAbind)
IPR015351
Hsal_09918--XP_397309.1_APIME
T166306_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Su(H)
M10415_2.00
Drosophila melanogaster
VGKTTCYCACRVY
RBYGTGRGAAMCB
Transfac
Matys et al.(2006)
I$SUH_01
0.869
0.869
Su(H)
M08455_2.00
Drosophila melanogaster
HBHNVGKTTCYCACRV
BYGTGRGAAMCBNDVD
COMPILED
Mathelier et al.(2014)
MA0085.1
0.869
0.869
RBPJ
M00735_2.00
Homo sapiens
NNNBTCHCAN
NTGDGAVNNN
PBM
DelBianco et al.(2010)
GST-CSL_Fig2
0.792
0.792
RBPJ
M00736_2.00
Homo sapiens
NNNYTCHCAN
NTGDGARNNN
PBM
DelBianco et al.(2010)
GST-CSL_Fig4
0.792
0.792
RBPJ
M00737_2.00
Homo sapiens
NNNBTCHCAN
NTGDGAVNNN
PBM
DelBianco et al.(2010)
GST-CSL-NOTCH1
0.792
0.792
RBPJ
M00738_2.00
Homo sapiens
NBTCHCAN
NTGDGAVN
PBM
DelBianco et al.(2010)
GST-NOTCH1_CSL-6His_MAML1
0.792
0.792
RBPJ
M00739_2.00
Homo sapiens
NNBTCHCAN
NTGDGAVNN
PBM
DelBianco et al.(2010)
GST-NOTCH1_CSL-6His
0.792
0.792
RBPJ
M00740_2.00
Homo sapiens
NNNYTCYCAN
NTGRGARNNN
PBM
DelBianco et al.(2010)
GST-NOTCH1_Fig2
0.792
0.792
RBPJ
M00741_2.00
Homo sapiens
NNNBTCHCAN
NTGDGAVNNN
PBM
DelBianco et al.(2010)
MAML1-CSL-GST-NOTCH1_Fig2
0.792
0.792
RBPJ
M00742_2.00
Homo sapiens
NDYTCHCAB
VTGDGARHN
PBM
DelBianco et al.(2010)
MAML1-CSL-GST-NOTCH1_Fig5
0.792
0.792
RBPJ
M08105_2.00
Homo sapiens
NNTTCCCABN
NVTGGGAANN
ChIP-seq
Mathelier et al.(2014)
MA1116.1
0.792
0.792
RBPJ
M09020_2.00
Homo sapiens
BTTCCCASVVN
NBBSTGGGAAV
Misc
Kulakovskiy et al.(2013)
SUH_HUMAN.H11MO.0.A
0.792
0.792
Rbpj
M09021_2.00
Mus musculus
NBTTCCCASVV
BBSTGGGAAVN
Misc
Kulakovskiy et al.(2013)
SUH_MOUSE.H11MO.0.A
0.792
0.792
RBPJ
M10413_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RBPJK_01
0.792
0.792
RBPJ
M10414_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RBPJK_Q4
0.792
0.792
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Hsal_09918--XP_397309.1_APIME
CSL
61
192
IVILHAKVAQKSYGNEKRFFCPPPCIYLFGDGWRMRQEQMLREGETDQSSQLCAFIGIGNSDQDMQQLDLNNGKQYCAAKTLYISDSDKRKHFMLSVKMFYGSGHDIGVFHSKRIKVISKPSKKKQSLKNAD
Links
Other
CSL
family TFs
Other
Harpegnathos saltator
TFs
170 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AB00587.1
Alternaria brassicicola
AB00587.1
I
0.000
BAUCODRAFT_79055
Baudoinia compniacensis
BAUCODRAFT_79055
I
0.000
Bcin12g03530
Botrytis cinerea
Bcin12g03530
I
0.000
CaO19.1227
Candida albicans
CaO19.1227
I
0.000
CaO19.8813
Candida albicans
CaO19.8813
I
0.000
CD36_07140
Candida dubliniensis
CD36_07140
I
0.000
CHGG_04995
Chaetomium globosum
CHGG_04995
I
0.000
Cob_02318
Colletotrichum orbiculare
Cob_02318
I
0.000
COCC4DRAFT_156489
Bipolaris maydis
COCC4DRAFT_156489
I
0.000
COCMIDRAFT_81410
Bipolaris oryzae
COCMIDRAFT_81410
I
0.000
COCSADRAFT_166493
Bipolaris sorokiniana
COCSADRAFT_166493
I
0.000
COCVIDRAFT_12975
Bipolaris victoriae
COCVIDRAFT_12975
I
0.000
EPUS_00566
Endocarpon pusillum
EPUS_00566
I
0.000
estExt_fgenesh1_pg.C_20387
Cochliobolus heterostrophus C5
estExt_fgenesh1_pg.C_20387
I
0.000
estExt_fgenesh2_pg.C_30094
Neurospora discreta
estExt_fgenesh2_pg.C_30094
I
0.000
e_gw1.20.1180.1
Nectria haematococca
e_gw1.20.1180.1
I
0.000
F503_05814
Ophiostoma piceae uamh
F503_05814
I
0.000
FFUJ_09638
Fusarium fujikuroi
FFUJ_09638
I
0.000
FGRRES_16137
Fusarium graminearum
FGRRES_16137
I
0.000
FOXG_11440
Fusarium oxysporum
FOXG_11440
I
0.000
FPSE_10395
Fusarium pseudograminearum
FPSE_10395
I
0.000
FVEG_10380
Fusarium verticillioides
FVEG_10380
I
0.000
GGTG_03357
Gaeumannomyces graminis
GGTG_03357
I
0.000
GLRG_05692
Colletotrichum graminicola
GLRG_05692
I
0.000
gw1.10.415.1
Mycosphaerella fijiensis
gw1.10.415.1
I
0.000
LEMA_P036570.1
Leptosphaeria maculans
LEMA_P036570.1
I
0.000
MAPG_01428
Magnaporthe poae
MAPG_01428
I
0.000
MGG_01887
Magnaporthe oryzae
MGG_01887
I
0.000
MYCFIDRAFT_107799
Pseudocercospora fijiensis
MYCFIDRAFT_107799
I
0.000
NCU08658
Neurospora crassa
NCU08658
D
0.000
NechaG43849
Fusarium solani
NechaG43849
I
0.000
NEUTE1DRAFT_39574
Neurospora tetrasperma
NEUTE1DRAFT_39574
I
0.000
PTRG_08944
Pyrenophora triticirepentis
PTRG_08944
I
0.000
PTT_17743
Pyrenophora teres
PTT_17743
I
0.000
PV07_00139
Cladophialophora immunda
PV07_00139
I
0.000
PV07_00458
Cladophialophora immunda
PV07_00458
I
0.000
SBOR_8674
Sclerotinia borealis
SBOR_8674
I
0.000
SNOG_08674
Phaeosphaeria nodorum
SNOG_08674
N
0.000
SNOG_08674
Stagonospora nodorum
SNOG_08674
N
0.000
THITE_11494
Thielavia terrestris
THITE_11494
I
0.000
VDAG_10186
Verticillium dahliae
VDAG_10186
I
0.000
Z517_01546
Fonsecaea pedrosoi
Z517_01546
I
0.000
Z517_01830
Fonsecaea pedrosoi
Z517_01830
I
0.000