CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ceh-38
(
Caenorhabditis elegans
)
CUT,Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02376 (CUT)
PF00046 (Homeobox)
IPR003350
IPR001356
WBGene00000459
T167388_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in several structures, including body wall musculature; digestive tract; hypodermis; neurons; and somatic nervous system. [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
onecut
M03716_2.00
Drosophila melanogaster
NNVRATCRATAHNN
NNDTATYGATYBNN
SELEX
Nitta et al.(2015)
onecut_1
0.713
0.713
onecut
M03717_2.00
Drosophila melanogaster
NNTATYGATTWNN
NNWAATCRATANN
SELEX
Nitta et al.(2015)
onecut_2
0.713
0.713
onecut
M06472_2.00
Drosophila melanogaster
HAATCAA
TTGATTD
B1H
Mathelier et al.(2014)
MA0235.1
0.713
0.713
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
F22D3.1a
CUT
304
382
DDIYIDTKDLCKRIAFELKNHSIPQAIFAERILCRSQGTLSDLLRNPKPWNKLKSGRETFRRMYNWVAQPLATRLAILD
F22D3.1a
Homeodomain
419
475
KRPRLVFTDIQKRTLQAIFKETQRPSREMQQTIAEHLRLDLSTVANFFMNARRRSRL
F22D3.1b
CUT
313
391
DDIYIDTKDLCKRIAFELKNHSIPQAIFAERILCRSQGTLSDLLRNPKPWNKLKSGRETFRRMYNWVAQPLATRLAILD
F22D3.1b
Homeodomain
428
484
KRPRLVFTDIQKRTLQAIFKETQRPSREMQQTIAEHLRLDLSTVANFFMNARRRSRL
Links
Other
CUT,Homeodomain
family TFs
Other
Caenorhabditis elegans
TFs
121 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy