CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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DOF5.6
(
Arabidopsis thaliana
)
Dof
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02701 (zf-Dof)
IPR003851
AT5G62940
T170183_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
HCA2 induces the formation of interfascicular cambium and regulates vascular tissue development in the aerial parts of the plant. Evidence from both gain of function and dominant negative alleles.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DOF5.6
M01063_2.00
Arabidopsis thaliana
NYDDWNNNN
NNNNWHHRN
PBM
Sullivan et al.(2014)
pTH7192
(Direct)
(Direct)
DOF5.6
M01950_2.00
Arabidopsis thaliana
NCKTTWNN
NNWAAMGN
PBM
Weirauch et al.(2014)
pTH7655
(Direct)
(Direct)
DOF5.6
M06867_2.00
Arabidopsis thaliana
HHTYHNCTTTTTNHHHHHHHH
DDDDDDDDNAAAAAGNDRADD
Dap-seq
OMalley et al.(2016)
At5g62940_col_a
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK20317.1
M01221_2.00
Cannabis sativa
CKTTWNN
NNWAAMG
PBM
Lambert et al.(2019)
pTH11298
0.932
0.932
DOF5.3
M01947_2.00
Arabidopsis thaliana
CKTTNNN
NNNAAMG
PBM
Weirauch et al.(2014)
pTH7182
0.814
0.814
PK07031.1
M01216_2.00
Cannabis sativa
NCKTTHN
NDAAMGN
PBM
Lambert et al.(2019)
pTH11435
0.814
0.814
PK05671.1
M01215_2.00
Cannabis sativa
NCDWWNNN
NNNWWHGN
PBM
Lambert et al.(2019)
pTH10101
0.797
0.797
PK15337.1
M01219_2.00
Cannabis sativa
NCTTTHN
NDAAAGN
PBM
Lambert et al.(2019)
pTH10186
0.797
0.797
DOF1.8
M01939_2.00
Arabidopsis thaliana
NNNCKTTHNN
NNDAAMGNNN
PBM
Weirauch et al.(2014)
pTH7256
0.763
0.763
DOF1.8
M01062_2.00
Arabidopsis thaliana
NHVCTTTWH
DWAAAGBDN
PBM
Sullivan et al.(2014)
pTH7653
0.763
0.763
e_gw1.170.52.1
M01952_2.00
Physcomitrella patens
NNNCTTTHNN
NNDAAAGNNN
PBM
Weirauch et al.(2014)
pTH8464
0.763
0.763
gw1.12.257.1
M01955_2.00
Physcomitrella patens
NNDDNNN
NNNHHNN
PBM
Weirauch et al.(2014)
pTH8651
0.763
0.763
PK20555.1
M01222_2.00
Cannabis sativa
NNNCTTTWNN
NNWAAAGNNN
PBM
Lambert et al.(2019)
pTH10144
0.763
0.763
DOF1.8
M06835_2.00
Arabidopsis thaliana
WWWYHMCTTTTTNNNHNHW
WDNDNNNAAAAAGKDRWWW
Dap-seq
OMalley et al.(2016)
At1g64620_100ng20cy_b
0.763
0.763
DOF1.8
M06836_2.00
Arabidopsis thaliana
NHHMCTTTTTN
NAAAAAGKDDN
Dap-seq
OMalley et al.(2016)
At1g64620_colamp_a
0.763
0.763
PBF
M02675_2.00
Zea mays
RCTTT
AAAGY
SELEX
Mathelier et al.(2014)
MA0064.1
0.763
0.763
PBF
M10438_2.00
Zea mays
BBDCTTTWNWD
HWNWAAAGHVV
Transfac
Matys et al.(2006)
P$PBF_01
0.763
0.763
DOF2.4
M01940_2.00
Arabidopsis thaliana
NCKTTWN
NWAAMGN
PBM
Weirauch et al.(2014)
pTH7912
0.746
0.746
DOF3.2
M01943_2.00
Arabidopsis thaliana
NHDNNNNN
NNNNNHDN
PBM
Weirauch et al.(2014)
pTH7183
0.746
0.746
DOF5.4
M01948_2.00
Arabidopsis thaliana
NDCGTTAWCN
NGWTAACGHN
PBM
Weirauch et al.(2014)
pTH7160
0.746
0.746
DOF5.4
M01949_2.00
Arabidopsis thaliana
NWACGTTWHNN
NNDWAACGTWN
PBM
Weirauch et al.(2014)
pTH7535
0.746
0.746
DOF5.7
M00862_2.00
Arabidopsis thaliana
NNNCKTTN
NAAMGNNN
PBM
Franco-Zorrilla et al.(2014)
Dof5.7
0.746
0.746
PK03929.1
M01214_2.00
Cannabis sativa
NNNCTTTWNN
NNWAAAGNNN
PBM
Lambert et al.(2019)
pTH10165
0.746
0.746
PK14080.1
M01218_2.00
Cannabis sativa
NCDTTHNN
NNDAAHGN
PBM
Lambert et al.(2019)
pTH10123
0.746
0.746
DOF1.7
M06833_2.00
Arabidopsis thaliana
HNNHWTYWNCTTTTYNHNHHN
NDDNDNRAAAAGNWRAWDNND
Dap-seq
OMalley et al.(2016)
Adof1_col_a
0.746
0.746
DOF1.7
M06834_2.00
Arabidopsis thaliana
NNHNNYWRCTTTTTNNHHNNH
DNNDDNNAAAAAGYWRNNDNN
Dap-seq
OMalley et al.(2016)
Adof1_colamp_a
0.746
0.746
DOF3.2
M06847_2.00
Arabidopsis thaliana
NYHVCTTTTTNNHHTHHNN
NNDDADDNNAAAAAGBDRN
Dap-seq
OMalley et al.(2016)
At3g45610_col_a
0.746
0.746
DOF3.2
M06848_2.00
Arabidopsis thaliana
NNHDDYHVCTTTTTB
VAAAAAGBDRHHDNN
Dap-seq
OMalley et al.(2016)
At3g45610_colamp_a
0.746
0.746
AT3G52440
M06852_2.00
Arabidopsis thaliana
DYHMCTTTWTN
NAWAAAGKDRH
Dap-seq
OMalley et al.(2016)
AT3G52440_col_a
0.746
0.746
AT3G52440
M06853_2.00
Arabidopsis thaliana
WWDDYHMCTTTTTNNHHYYWW
WWRRDDNNAAAAAGKDRHHWW
Dap-seq
OMalley et al.(2016)
AT3G52440_colamp_a
0.746
0.746
DOF2.4
M06841_2.00
Arabidopsis thaliana
HHWWTTHMCTTTTTN
NAAAAAGKDAAWWDD
Dap-seq
OMalley et al.(2016)
dof24_col_a
0.746
0.746
DOF2.4
M06842_2.00
Arabidopsis thaliana
HHMCTTTWTNNNNHN
NDNNNNAWAAAGKDD
Dap-seq
OMalley et al.(2016)
dof24_colamp_a
0.746
0.746
DOF5.4
M06865_2.00
Arabidopsis thaliana
DNWNYHMCTTTTTN
NAAAAAGKDRNWNH
Dap-seq
OMalley et al.(2016)
OBP4_col_a
0.746
0.746
DOF5.4
M06866_2.00
Arabidopsis thaliana
HWDYHVCTTTTTNNNHHNH
DNDDNNNAAAAAGBDRHWD
Dap-seq
OMalley et al.(2016)
OBP4_colamp_a
0.746
0.746
DOF2.5
M01212_2.00
Arabidopsis thaliana
NNNCKTTWNN
NNWAAMGNNN
PBM
Lambert et al.(2019)
pTH11562
0.729
0.729
DOF3.1
M01942_2.00
Arabidopsis thaliana
NCKTTNNN
NNNAAMGN
PBM
Weirauch et al.(2014)
pTH8190
0.729
0.729
PK10955.1
M01217_2.00
Cannabis sativa
VCTTTWNN
NNWAAAGB
PBM
Lambert et al.(2019)
pTH10264
0.729
0.729
PK23763.1
M01224_2.00
Cannabis sativa
NNNCTTTWN
NWAAAGNNN
PBM
Lambert et al.(2019)
pTH10194
0.729
0.729
DOF2.5
M06843_2.00
Arabidopsis thaliana
DYHMCTTTTTN
NAAAAAGKDRH
Dap-seq
OMalley et al.(2016)
DAG2_col_a
0.729
0.729
DOF2.5
M06844_2.00
Arabidopsis thaliana
HWDYHMCTTTTTN
NAAAAAGKDRHWD
Dap-seq
OMalley et al.(2016)
DAG2_colamp_a
0.729
0.729
PK01144.1
M01213_2.00
Cannabis sativa
NCTTTWN
NWAAAGN
PBM
Lambert et al.(2019)
pTH10160
0.712
0.712
DOF2.2
M06839_2.00
Arabidopsis thaliana
HHHYHHHHYWTYHNCTTTTTN
NAAAAAGNDRAWRDDDDRDDD
Dap-seq
OMalley et al.(2016)
AT2G28810_col_a
0.712
0.712
DOF2.2
M06840_2.00
Arabidopsis thaliana
NYHNCTTTWTNNNHH
DDNNNAWAAAGNDRN
Dap-seq
OMalley et al.(2016)
AT2G28810_colamp_a
0.712
0.712
DOF5.1
M06863_2.00
Arabidopsis thaliana
HYHYWYHHHYTTWNCTTTTTN
NAAAAAGNWAARDDDRWRDRD
Dap-seq
OMalley et al.(2016)
AT5G02460_col_a
0.712
0.712
DOF5.1
M06864_2.00
Arabidopsis thaliana
NHDYHRCTTTWTNNHNNHN
NDNNDNNAWAAAGYDRHDN
Dap-seq
OMalley et al.(2016)
AT5G02460_colamp_a
0.712
0.712
DOF5.8
M06868_2.00
Arabidopsis thaliana
HHNHHYHHHHYTTTHNCTTTTKNNHHNHW
WDNDDNNMAAAAGNDAAARDDDDRDDNDD
Dap-seq
OMalley et al.(2016)
AT5G66940_col_a
0.712
0.712
DOF5.8
M06869_2.00
Arabidopsis thaliana
NNHNDYWRCTTTTTNNHYHNH
DNDRDNNAAAAAGYWRHNDNN
Dap-seq
OMalley et al.(2016)
AT5G66940_colamp_a
0.712
0.712
OBP3
M06854_2.00
Arabidopsis thaliana
BTHWCTTTTYNHYTTYWYYHH
DDRRWRAARDNRAAAAGWDAV
Dap-seq
OMalley et al.(2016)
OBP3_col_a
0.712
0.712
OBP3
M06855_2.00
Arabidopsis thaliana
NHNWHNHHNYWNCTTTTYN
NRAAAAGNWRNDDNDWNDN
Dap-seq
OMalley et al.(2016)
OBP3_colamp_a
0.712
0.712
Q6RK62_WHEAT
M10441_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PBF_Q2_01
0.712
0.712
MNB1A
M02677_2.00
Zea mays
DCTTT
AAAGH
SELEX
Mathelier et al.(2014)
MA0053.1
0.695
0.695
MNB1A
M10440_2.00
Zea mays
NNDCTTTWNNN
NNNWAAAGHNN
Transfac
Matys et al.(2006)
P$DOF1_01
0.695
0.695
DOF4.7
M01945_2.00
Arabidopsis thaliana
NCKTTHNNN
NNNDAAMGN
PBM
Weirauch et al.(2014)
pTH7189
0.678
0.678
CDF2
M01946_2.00
Arabidopsis thaliana
NHVCTTTWHN
NDWAAAGBDN
PBM
Weirauch et al.(2014)
pTH7574
0.678
0.678
gw1.385.26.1
M01956_2.00
Physcomitrella patens
NNNCKTTWNN
NNWAAMGNNN
PBM
Weirauch et al.(2014)
pTH8458
0.678
0.678
DOF1.6
M06831_2.00
Arabidopsis thaliana
HYACTTTWNNN
NNNWAAAGTRD
Dap-seq
OMalley et al.(2016)
AT1G47655_col_a
0.678
0.678
DOF1.6
M06832_2.00
Arabidopsis thaliana
YYYTTDNCTTTWYBN
NVRWAAAGNHAARRR
Dap-seq
OMalley et al.(2016)
AT1G47655_colamp_a
0.678
0.678
DOF4.7
M06861_2.00
Arabidopsis thaliana
HHHHYHHHNHHHHHHHWWTWWCTTTTTN
NAAAAAGWWAWWDDDDDDDNDDDRDDDD
Dap-seq
OMalley et al.(2016)
At4g38000_col_a
0.678
0.678
DOF4.7
M06862_2.00
Arabidopsis thaliana
NYWACTTTWTB
VAWAAAGTWRN
Dap-seq
OMalley et al.(2016)
At4g38000_colamp_a
0.678
0.678
DOF3.4
M06851_2.00
Arabidopsis thaliana
NNNHYHYHHHWYYHNCTTTWB
VWAAAGNDRRWDDDRDRDNNN
Dap-seq
OMalley et al.(2016)
OBP1_col_a
0.678
0.678
Dof3
M02676_2.00
Zea mays
BRCTTT
AAAGYV
SELEX
Mathelier et al.(2014)
MA0021.1
0.678
0.678
Dof3
M10439_2.00
Zea mays
NBNCTTTNNBN
NVNNAAAGNVN
Transfac
Matys et al.(2006)
P$DOF3_01
0.678
0.678
e_gw1.149.93.1
M01951_2.00
Physcomitrella patens
NCDTTNNN
NNNAAHGN
PBM
Weirauch et al.(2014)
pTH8463
0.661
0.661
e_gw1.392.16.1
M01953_2.00
Physcomitrella patens
NNCTTTWNN
NNWAAAGNN
PBM
Weirauch et al.(2014)
pTH8686
0.661
0.661
estExt_fgenesh1_pg.C_370003
M01954_2.00
Physcomitrella patens
NNNNHDNNNN
NNNNHDNNNN
PBM
Weirauch et al.(2014)
pTH8469
0.661
0.661
CDF5
M06837_2.00
Arabidopsis thaliana
HHWKYDCTTTTHHYTTTHYHYYWHNHH
DDNDWRRDRDAAARDDAAAAGHRMWDD
Dap-seq
OMalley et al.(2016)
AT1G69570_col_a
0.661
0.661
CDF5
M06838_2.00
Arabidopsis thaliana
YVCTTTTNNYTTWHHHBHBNN
NNVDVDDDWAARNNAAAAGBR
Dap-seq
OMalley et al.(2016)
AT1G69570_colamp_a
0.661
0.661
Dof2
M02674_2.00
Zea mays
NGCTTT
AAAGCN
SELEX
Mathelier et al.(2014)
MA0020.1
0.661
0.661
Dof2
M10436_2.00
Zea mays
NNDCTTTWNND
HNNWAAAGHNN
Transfac
Matys et al.(2006)
P$DOF2_01
0.661
0.661
Dof2
M10437_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DOF_Q2
0.661
0.661
DOF1.5
M01938_2.00
Arabidopsis thaliana
ACKTTWWH
DWWAAMGT
PBM
Weirauch et al.(2014)
pTH7676
0.644
0.644
CDF3
M01944_2.00
Arabidopsis thaliana
NHVCTTTWN
NWAAAGBDN
PBM
Weirauch et al.(2014)
pTH7659
0.644
0.644
CDF3
M06849_2.00
Arabidopsis thaliana
HWTDYMCTTTTTNNHHHHW
WDDDDNNAAAAAGKRHAWD
Dap-seq
OMalley et al.(2016)
CDF3_col_a
0.644
0.644
CDF3
M06850_2.00
Arabidopsis thaliana
DDYRCTTTTHNNHYTTTN
NAAARDNNDAAAAGYRHH
Dap-seq
OMalley et al.(2016)
CDF3_colamp_a
0.644
0.644
DOF1.5
M06829_2.00
Arabidopsis thaliana
HWTDYMCTTTTTNHHHBHHNN
NNDDVDDDNAAAAAGKRHAWD
Dap-seq
OMalley et al.(2016)
COG1_col_a
0.644
0.644
DOF1.5
M06830_2.00
Arabidopsis thaliana
NHWWTDYACTTTTTN
NAAAAAGTRHAWWDN
Dap-seq
OMalley et al.(2016)
COG1_colamp_a
0.644
0.644
PK16340.1
M01220_2.00
Cannabis sativa
CKTTWNN
NNWAAMG
PBM
Lambert et al.(2019)
pTH10129
0.627
0.627
DOF4.3
M06857_2.00
Arabidopsis thaliana
AAAGNYRCTTT
AAAGYRNCTTT
Dap-seq
OMalley et al.(2016)
dof43_col_a
0.627
0.627
DOF4.3
M06858_2.00
Arabidopsis thaliana
NWAAAGHRVCTTTW
WAAAGBYDCTTTWN
Dap-seq
OMalley et al.(2016)
dof43_colamp_a
0.627
0.627
DOF4.5
M06859_2.00
Arabidopsis thaliana
AAAKYHDCTTTWTN
NAWAAAGHDRMTTT
Dap-seq
OMalley et al.(2016)
dof45_col_a
0.627
0.627
DOF4.5
M06860_2.00
Arabidopsis thaliana
WAAAGYYDCTTTWDN
NHWAAAGHRRCTTTW
Dap-seq
OMalley et al.(2016)
dof45_colamp_a
0.627
0.627
PK23009.1
M01223_2.00
Cannabis sativa
NNHVCTTTWN
NWAAAGBDNN
PBM
Lambert et al.(2019)
pTH10279
0.610
0.610
fgenesh1_pg.C_Chr_08.0001000114
M01957_2.00
Ostreococcus tauri
NCKWWNNN
NNNWWMGN
PBM
Weirauch et al.(2014)
pTH9431
0.559
0.559
DOF4.2
M06856_2.00
Arabidopsis thaliana
NNHWWWRCCTTTTTNNHNH
DNDNNAAAAAGGYWWWDNN
Dap-seq
OMalley et al.(2016)
dof42_col_a
0.559
0.559
For this family, TFs with SR scores >
0.508
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01063_2.00
Dof
53
111
DHPQKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKP
M01950_2.00
Dof
53
111
DHPQKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKP
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT5G62940.1
Dof
70
128
DHPQKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKP
Links
Other
Dof
family TFs
Other
Arabidopsis thaliana
TFs
1967 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy