CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

fgenesh1_pg.C_Chr_08.0001000114 *(Ostreococcus tauri)* Dof
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF02701 (zf-Dof)	IPR003851	fgenesh1_pg.C_Chr_08.0001000114	T172185_2.00	Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
fgenesh1_pg.C_Chr_08.0001000114 M01957_2.00	Ostreococcus tauri	NCKWWNNN	NNNWWMGN	PBM Weirauch et al.(2014) pTH9431	(Direct)	(Direct)
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
CDF5 M06837_2.00	Arabidopsis thaliana	HHWKYDCTTTTHHYTTTHYHYYWHNHH	DDNDWRRDRDAAARDDAAAAGHRMWDD	Dap-seq OMalley et al.(2016) AT1G69570_col_a	0.593	0.593
CDF5 M06838_2.00	Arabidopsis thaliana	YVCTTTTNNYTTWHHHBHBNN	NNVDVDDDWAARNNAAAAGBR	Dap-seq OMalley et al.(2016) AT1G69570_colamp_a	0.593	0.593
AT3G52440 M06852_2.00	Arabidopsis thaliana	DYHMCTTTWTN	NAWAAAGKDRH	Dap-seq OMalley et al.(2016) AT3G52440_col_a	0.593	0.593
AT3G52440 M06853_2.00	Arabidopsis thaliana	WWDDYHMCTTTTTNNHHYYWW	WWRRDDNNAAAAAGKDRHHWW	Dap-seq OMalley et al.(2016) AT3G52440_colamp_a	0.593	0.593
DOF4.5 M06859_2.00	Arabidopsis thaliana	AAAKYHDCTTTWTN	NAWAAAGHDRMTTT	Dap-seq OMalley et al.(2016) dof45_col_a	0.576	0.576
DOF4.5 M06860_2.00	Arabidopsis thaliana	WAAAGYYDCTTTWDN	NHWAAAGHRRCTTTW	Dap-seq OMalley et al.(2016) dof45_colamp_a	0.576	0.576
DOF1.5 M01938_2.00	Arabidopsis thaliana	ACKTTWWH	DWWAAMGT	PBM Weirauch et al.(2014) pTH7676	0.559	0.559
DOF5.3 M01947_2.00	Arabidopsis thaliana	CKTTNNN	NNNAAMG	PBM Weirauch et al.(2014) pTH7182	0.559	0.559
DOF5.6 M01063_2.00	Arabidopsis thaliana	NYDDWNNNN	NNNNWHHRN	PBM Sullivan et al.(2014) pTH7192	0.559	0.559
DOF5.6 M01950_2.00	Arabidopsis thaliana	NCKTTWNN	NNWAAMGN	PBM Weirauch et al.(2014) pTH7655	0.559	0.559
e_gw1.149.93.1 M01951_2.00	Physcomitrella patens	NCDTTNNN	NNNAAHGN	PBM Weirauch et al.(2014) pTH8463	0.559	0.559
e_gw1.170.52.1 M01952_2.00	Physcomitrella patens	NNNCTTTHNN	NNDAAAGNNN	PBM Weirauch et al.(2014) pTH8464	0.559	0.559
e_gw1.392.16.1 M01953_2.00	Physcomitrella patens	NNCTTTWNN	NNWAAAGNN	PBM Weirauch et al.(2014) pTH8686	0.559	0.559
gw1.12.257.1 M01955_2.00	Physcomitrella patens	NNDDNNN	NNNHHNN	PBM Weirauch et al.(2014) pTH8651	0.559	0.559
PK07031.1 M01216_2.00	Cannabis sativa	NCKTTHN	NDAAMGN	PBM Lambert et al.(2019) pTH11435	0.559	0.559
PK16340.1 M01220_2.00	Cannabis sativa	CKTTWNN	NNWAAMG	PBM Lambert et al.(2019) pTH10129	0.559	0.559
DOF1.6 M06831_2.00	Arabidopsis thaliana	HYACTTTWNNN	NNNWAAAGTRD	Dap-seq OMalley et al.(2016) AT1G47655_col_a	0.559	0.559
DOF1.6 M06832_2.00	Arabidopsis thaliana	YYYTTDNCTTTWYBN	NVRWAAAGNHAARRR	Dap-seq OMalley et al.(2016) AT1G47655_colamp_a	0.559	0.559
DOF5.6 M06867_2.00	Arabidopsis thaliana	HHTYHNCTTTTTNHHHHHHHH	DDDDDDDDNAAAAAGNDRADD	Dap-seq OMalley et al.(2016) At5g62940_col_a	0.559	0.559
DOF1.5 M06829_2.00	Arabidopsis thaliana	HWTDYMCTTTTTNHHHBHHNN	NNDDVDDDNAAAAAGKRHAWD	Dap-seq OMalley et al.(2016) COG1_col_a	0.559	0.559
DOF1.5 M06830_2.00	Arabidopsis thaliana	NHWWTDYACTTTTTN	NAAAAAGTRHAWWDN	Dap-seq OMalley et al.(2016) COG1_colamp_a	0.559	0.559
DOF4.3 M06857_2.00	Arabidopsis thaliana	AAAGNYRCTTT	AAAGYRNCTTT	Dap-seq OMalley et al.(2016) dof43_col_a	0.559	0.559
DOF4.3 M06858_2.00	Arabidopsis thaliana	NWAAAGHRVCTTTW	WAAAGBYDCTTTWN	Dap-seq OMalley et al.(2016) dof43_colamp_a	0.559	0.559
Dof2 M02674_2.00	Zea mays	NGCTTT	AAAGCN	SELEX Mathelier et al.(2014) MA0020.1	0.559	0.559
Dof2 M10436_2.00	Zea mays	NNDCTTTWNND	HNNWAAAGHNN	Transfac Matys et al.(2006) P$DOF2_01	0.559	0.559
Dof2 M10437_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$DOF_Q2	0.559	0.559
DOF1.8 M01939_2.00	Arabidopsis thaliana	NNNCKTTHNN	NNDAAMGNNN	PBM Weirauch et al.(2014) pTH7256	0.542	0.542
DOF1.8 M01062_2.00	Arabidopsis thaliana	NHVCTTTWH	DWAAAGBDN	PBM Sullivan et al.(2014) pTH7653	0.542	0.542
DOF3.2 M01943_2.00	Arabidopsis thaliana	NHDNNNNN	NNNNNHDN	PBM Weirauch et al.(2014) pTH7183	0.542	0.542
CDF2 M01946_2.00	Arabidopsis thaliana	NHVCTTTWHN	NDWAAAGBDN	PBM Weirauch et al.(2014) pTH7574	0.542	0.542
estExt_fgenesh1_pg.C_370003 M01954_2.00	Physcomitrella patens	NNNNHDNNNN	NNNNHDNNNN	PBM Weirauch et al.(2014) pTH8469	0.542	0.542
DOF1.8 M06835_2.00	Arabidopsis thaliana	WWWYHMCTTTTTNNNHNHW	WDNDNNNAAAAAGKDRWWW	Dap-seq OMalley et al.(2016) At1g64620_100ng20cy_b	0.542	0.542
DOF1.8 M06836_2.00	Arabidopsis thaliana	NHHMCTTTTTN	NAAAAAGKDDN	Dap-seq OMalley et al.(2016) At1g64620_colamp_a	0.542	0.542
DOF3.2 M06847_2.00	Arabidopsis thaliana	NYHVCTTTTTNNHHTHHNN	NNDDADDNNAAAAAGBDRN	Dap-seq OMalley et al.(2016) At3g45610_col_a	0.542	0.542
DOF3.2 M06848_2.00	Arabidopsis thaliana	NNHDDYHVCTTTTTB	VAAAAAGBDRHHDNN	Dap-seq OMalley et al.(2016) At3g45610_colamp_a	0.542	0.542
DOF2.5 M01212_2.00	Arabidopsis thaliana	NNNCKTTWNN	NNWAAMGNNN	PBM Lambert et al.(2019) pTH11562	0.525	0.525
DOF3.1 M01942_2.00	Arabidopsis thaliana	NCKTTNNN	NNNAAMGN	PBM Weirauch et al.(2014) pTH8190	0.525	0.525
CDF3 M01944_2.00	Arabidopsis thaliana	NHVCTTTWN	NWAAAGBDN	PBM Weirauch et al.(2014) pTH7659	0.525	0.525
DOF5.7 M00862_2.00	Arabidopsis thaliana	NNNCKTTN	NAAMGNNN	PBM Franco-Zorrilla et al.(2014) Dof5.7	0.525	0.525
gw1.385.26.1 M01956_2.00	Physcomitrella patens	NNNCKTTWNN	NNWAAMGNNN	PBM Weirauch et al.(2014) pTH8458	0.525	0.525
PK01144.1 M01213_2.00	Cannabis sativa	NCTTTWN	NWAAAGN	PBM Lambert et al.(2019) pTH10160	0.525	0.525
PK05671.1 M01215_2.00	Cannabis sativa	NCDWWNNN	NNNWWHGN	PBM Lambert et al.(2019) pTH10101	0.525	0.525
PK10955.1 M01217_2.00	Cannabis sativa	VCTTTWNN	NNWAAAGB	PBM Lambert et al.(2019) pTH10264	0.525	0.525
PK15337.1 M01219_2.00	Cannabis sativa	NCTTTHN	NDAAAGN	PBM Lambert et al.(2019) pTH10186	0.525	0.525
PK20317.1 M01221_2.00	Cannabis sativa	CKTTWNN	NNWAAMG	PBM Lambert et al.(2019) pTH11298	0.525	0.525
PK20555.1 M01222_2.00	Cannabis sativa	NNNCTTTWNN	NNWAAAGNNN	PBM Lambert et al.(2019) pTH10144	0.525	0.525
PK23009.1 M01223_2.00	Cannabis sativa	NNHVCTTTWN	NWAAAGBDNN	PBM Lambert et al.(2019) pTH10279	0.525	0.525
CDF3 M06849_2.00	Arabidopsis thaliana	HWTDYMCTTTTTNNHHHHW	WDDDDNNAAAAAGKRHAWD	Dap-seq OMalley et al.(2016) CDF3_col_a	0.525	0.525
CDF3 M06850_2.00	Arabidopsis thaliana	DDYRCTTTTHNNHYTTTN	NAAARDNNDAAAAGYRHH	Dap-seq OMalley et al.(2016) CDF3_colamp_a	0.525	0.525
DOF2.5 M06843_2.00	Arabidopsis thaliana	DYHMCTTTTTN	NAAAAAGKDRH	Dap-seq OMalley et al.(2016) DAG2_col_a	0.525	0.525
DOF2.5 M06844_2.00	Arabidopsis thaliana	HWDYHMCTTTTTN	NAAAAAGKDRHWD	Dap-seq OMalley et al.(2016) DAG2_colamp_a	0.525	0.525
PBF M02675_2.00	Zea mays	RCTTT	AAAGY	SELEX Mathelier et al.(2014) MA0064.1	0.525	0.525
MNB1A M02677_2.00	Zea mays	DCTTT	AAAGH	SELEX Mathelier et al.(2014) MA0053.1	0.525	0.525
MNB1A M10440_2.00	Zea mays	NNDCTTTWNNN	NNNWAAAGHNN	Transfac Matys et al.(2006) P$DOF1_01	0.525	0.525
PBF M10438_2.00	Zea mays	BBDCTTTWNWD	HWNWAAAGHVV	Transfac Matys et al.(2006) P$PBF_01	0.525	0.525
Q6RK62_WHEAT M10441_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PBF_Q2_01	0.525	0.525
DOF2.4 M01940_2.00	Arabidopsis thaliana	NCKTTWN	NWAAMGN	PBM Weirauch et al.(2014) pTH7912	0.508	0.508
DOF4.7 M01945_2.00	Arabidopsis thaliana	NCKTTHNNN	NNNDAAMGN	PBM Weirauch et al.(2014) pTH7189	0.508	0.508
DOF5.4 M01948_2.00	Arabidopsis thaliana	NDCGTTAWCN	NGWTAACGHN	PBM Weirauch et al.(2014) pTH7160	0.508	0.508
DOF5.4 M01949_2.00	Arabidopsis thaliana	NWACGTTWHNN	NNDWAACGTWN	PBM Weirauch et al.(2014) pTH7535	0.508	0.508
PK03929.1 M01214_2.00	Cannabis sativa	NNNCTTTWNN	NNWAAAGNNN	PBM Lambert et al.(2019) pTH10165	0.508	0.508
PK14080.1 M01218_2.00	Cannabis sativa	NCDTTHNN	NNDAAHGN	PBM Lambert et al.(2019) pTH10123	0.508	0.508
DOF1.7 M06833_2.00	Arabidopsis thaliana	HNNHWTYWNCTTTTYNHNHHN	NDDNDNRAAAAGNWRAWDNND	Dap-seq OMalley et al.(2016) Adof1_col_a	0.508	0.508
DOF1.7 M06834_2.00	Arabidopsis thaliana	NNHNNYWRCTTTTTNNHHNNH	DNNDDNNAAAAAGYWRNNDNN	Dap-seq OMalley et al.(2016) Adof1_colamp_a	0.508	0.508
DOF4.7 M06861_2.00	Arabidopsis thaliana	HHHHYHHHNHHHHHHHWWTWWCTTTTTN	NAAAAAGWWAWWDDDDDDDNDDDRDDDD	Dap-seq OMalley et al.(2016) At4g38000_col_a	0.508	0.508
DOF4.7 M06862_2.00	Arabidopsis thaliana	NYWACTTTWTB	VAWAAAGTWRN	Dap-seq OMalley et al.(2016) At4g38000_colamp_a	0.508	0.508
DOF2.4 M06841_2.00	Arabidopsis thaliana	HHWWTTHMCTTTTTN	NAAAAAGKDAAWWDD	Dap-seq OMalley et al.(2016) dof24_col_a	0.508	0.508
DOF2.4 M06842_2.00	Arabidopsis thaliana	HHMCTTTWTNNNNHN	NDNNNNAWAAAGKDD	Dap-seq OMalley et al.(2016) dof24_colamp_a	0.508	0.508
DOF3.4 M06851_2.00	Arabidopsis thaliana	NNNHYHYHHHWYYHNCTTTWB	VWAAAGNDRRWDDDRDRDNNN	Dap-seq OMalley et al.(2016) OBP1_col_a	0.508	0.508
DOF5.4 M06865_2.00	Arabidopsis thaliana	DNWNYHMCTTTTTN	NAAAAAGKDRNWNH	Dap-seq OMalley et al.(2016) OBP4_col_a	0.508	0.508
DOF5.4 M06866_2.00	Arabidopsis thaliana	HWDYHVCTTTTTNNNHHNH	DNDDNNNAAAAAGBDRHWD	Dap-seq OMalley et al.(2016) OBP4_colamp_a	0.508	0.508
Dof3 M02676_2.00	Zea mays	BRCTTT	AAAGYV	SELEX Mathelier et al.(2014) MA0021.1	0.508	0.508
Dof3 M10439_2.00	Zea mays	NBNCTTTNNBN	NVNNAAAGNVN	Transfac Matys et al.(2006) P$DOF3_01	0.508	0.508
For this family, TFs with SR scores > 0.508* will likely have a similar motif*

Experimental Constructs

Motif ID	Domain	From	To	Sequence
M01957_2.00	Dof	53	111	NTPIPCARCGSDRTRFCYYNNGLPTQPRYYCRSCQRYWTDGGILRNLPEGSGKRKDRAP

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
fgenesh1_pg.C_Chr_08.0001000114	Dof	455	513	NTPIPCARCGSDRTRFCYYNNGLPTQPRYYCRSCQRYWTDGGILRNLPEGSGKRKDRAP

Links
Other Dof family TFs
Other *Ostreococcus tauri* TFs

1621 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AIL5	Arabidopsis thaliana	AT5G57390	I	0.000
AIL5	Vitis vinifera	VIT_11s0052g00840	I	0.000
Aquca_096_00025	Aquilegia coerulea	Aquca_096_00025	I	0.000
Bostr.26833s0517	Boechera stricta	Bostr.26833s0517	I	0.000
Bra020444	Brassica rapa	Bra020444	I	0.000
BRADI1G31337	Brachypodium distachyon	BRADI1G31337	I	0.000
Cagra.2848s0022	Capsella grandiflora	Cagra.2848s0022	I	0.000
Carubv10026181m.g	Capsella rubella	Carubv10026181m.g	I	0.000
cassava19478.valid.m1	Manihot esculenta	cassava19478.valid.m1	I	0.000
Ca_03239	Cicer arietinum	Ca_03239	I	0.000
Ciclev10007849m.g	Citrus clementina	Ciclev10007849m.g	I	0.000
Cucsa.065430	Cucumis sativus	Cucsa.065430	I	0.000
Cucsa.092550	Cucumis sativus	Cucsa.092550	I	0.000
GLYMA12G06010	Glycine max	GLYMA12G06010	I	0.000
GLYMA13G00950	Glycine max	GLYMA13G00950	I	0.000
GLYMA17G07010	Glycine max	GLYMA17G07010	I	0.000
Gorai.001G140000	Gossypium raimondii	Gorai.001G140000	I	0.000
Gorai.004G099100	Gossypium raimondii	Gorai.004G099100	I	0.000
GRMZM2G086573	Zea mays	GRMZM2G086573	I	0.000
GRMZM2G139082	Zea mays	GRMZM2G139082	I	0.000
GSMUA_Achr9G13660_001	Musa acuminata	GSMUA_Achr9G13660_001	I	0.000
GSMUA_AchrUn_randomG04590_001	Musa acuminata	GSMUA_AchrUn_randomG04590_001	I	0.000
Lus10031260.g	Linum usitatissimum	Lus10031260.g	I	0.000
Lus10031831.g	Linum usitatissimum	Lus10031831.g	I	0.000
MTR_4g127930	Medicago truncatula	MTR_4g127930	I	0.000
orange1.1g044828m.g	Citrus sinensis	orange1.1g044828m.g	I	0.000
ORGLA04G0240800	Oryza glaberrima	ORGLA04G0240800	I	0.000
OS04G0653600	Oryza sativa	OS04G0653600	I	0.000
OS06G0657500	Oryza sativa	OS06G0657500	I	0.000
Pavir.Da00344	Panicum virgatum	Pavir.Da00344	I	0.000
Pavir.Db00529	Panicum virgatum	Pavir.Db00529	I	0.000
Pavir.Gb00275	Panicum virgatum	Pavir.Gb00275	I	0.000
PK14410.1	Cannabis sativa	PK14410.1	I	0.000
PLT1	Arabidopsis lyrata	scaffold_302490.1	I	0.000
PLT1	Arabidopsis thaliana	AT3G20840	D	0.000
PLT2	Arabidopsis lyrata	scaffold_104875.1	I	0.000
PLT2	Arabidopsis thaliana	AT1G51190	I	0.000
POPTR_0006s18330	Populus trichocarpa	POPTR_0006s18330	I	0.000
SapurV1A.0313s0010	Salix purpurea	SapurV1A.0313s0010	I	0.000
SapurV1A.0764s0140	Salix purpurea	SapurV1A.0764s0140	I	0.000
SapurV1A.1279s0010	Salix purpurea	SapurV1A.1279s0010	I	0.000
SapurV1A.1889s0010	Salix purpurea	SapurV1A.1889s0010	I	0.000
Sb10g026150	Sorghum bicolor	Sb10g026150	I	0.000
Si008325m.g	Setaria italica	Si008325m.g	I	0.000
Si021959m.g	Setaria italica	Si021959m.g	I	0.000
TCM_039203	Theobroma cacao	TCM_039203	I	0.000
Thhalv10013143m.g	Eutrema salsugineum	Thhalv10013143m.g	I	0.000

fgenesh1_pg.C_Chr_08.0001000114 (Ostreococcus tauri) Dof

TF Information

Directly determined binding motifs

Motifs from related TFs

Experimental Constructs

DNA Binding Domains

Links

1621 Related TFs

fgenesh1_pg.C_Chr_08.0001000114 **(Ostreococcus tauri)
Dof**