gw.270.22.1 (Branchiostoma floridae)
E2F

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02319 (E2F_TDP) IPR003316 gw.270.22.1 T173858_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
E2F8
M02959_2.00 		Homo sapiens
TTTGGCGGGAAA
TTTCCCGCCAAA		 SELEX
Jolma et al.(2013)
E2F8_1 		0.725 0.725
E2F8
M04703_2.00 		Homo sapiens
WDKTGGCGGGARNN
NNYTCCCGCCAMHW		 SELEX
Yin et al.(2017)
E2F8_eDBD_HT-SELEX 		0.725 0.725
E2F8
M04704_2.00 		Homo sapiens
WTTTGGCGGGAAWN
NWTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F8_eDBD_Methyl-HT-SELEX 		0.725 0.725
E2F7
M02960_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Jolma et al.(2013)
E2F7_1 		0.681 0.681
E2F7
M04705_2.00 		Homo sapiens
WTTTGGCGGGAAAN
NTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_HT-SELEX 		0.681 0.681
E2F7
M09033_2.00 		Homo sapiens
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_HUMAN.H11MO.0.B 		0.681 0.681
E2f7
M09040_2.00 		Mus musculus
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_MOUSE.H11MO.0.C 		0.681 0.681
E2F7
M09522_2.00 		Homo sapiens
NSGCGSGAAMNN
NNKTTCSCGCSN		 Misc
Heinz et al.(2010)
Hela-E2F7_GSE32673 		0.681 0.681
E2F7
M04706_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_Methyl-HT-SELEX 		0.681 0.681
E2FE
M01958_2.00 		Arabidopsis thaliana
HDSGCGCSHD
HDSGCGCSHD		 PBM
Weirauch et al.(2014)
pTH8176 		0.594 0.594
E2FE
M06873_2.00 		Arabidopsis thaliana
TTTTGGCGGGAAAWWNWNDDN
NHHNWNWWTTTCCCGCCAAAA		 Dap-seq
OMalley et al.(2016)
DEL1_col_a 		0.594 0.594
E2FE
M06874_2.00 		Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH		 Dap-seq
OMalley et al.(2016)
DEL1_colamp_a 		0.594 0.594
E2FD
M06875_2.00 		Arabidopsis thaliana
DWWHDDTTTTGGCGGGAAAW
WTTTCCCGCCAAAAHHDWWH		 Dap-seq
OMalley et al.(2016)
DEL2_col_a 		0.435 0.435
E2FD
M06876_2.00 		Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH		 Dap-seq
OMalley et al.(2016)
DEL2_colamp_a 		0.435 0.435
E2FD
M10442_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$E2L1_Q2 		0.435 0.435
E2FD
M10443_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$E2L_Q2 		0.435 0.435
For this family, TFs with SR scores > 0.429 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
gw.270.22.1 E2F 1 31
gw.270.22.1 E2F 110 154

Links

Other E2F family TFs
Other Branchiostoma floridae TFs

215 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
0800010288 Ostreococcus tauri 0800010288 I 0.652
30147.m014015 Ricinus communis 30147.m014015 I 0.609
ACAC_0000024001 Angiostrongylus cantonensis ACAC_0000024001 I 0.435
Afo_R006642 Aptenodytes forsteri Afo_R006642 I 0.725
Afo_R014077 Aptenodytes forsteri Afo_R014077 I 0.681
Alligator_sinensis_CCG013028.1 Alligator sinensis Alligator_sinensis_CCG013028.1 I 0.725
Alligator_sinensis_CCG013028.2 Alligator sinensis Alligator_sinensis_CCG013028.2 I 0.725
ALUE_0000773501 Ascaris lumbricoides ALUE_0000773501 I 0.435
AMSG_04376 Thecamonas trahens AMSG_04376 N 0.435
ANCCAN_04600 Ancylostoma caninum ANCCAN_04600 I 0.435
Aqu1.202157 Amphimedon queenslandica Aqu1.202157 I 0.522
Aquca_025_00187 Aquilegia coerulea Aquca_025_00187 I 0.551
ASU_04096 Ascaris suum ASU_04096 I 0.435
BGIOSGA005653 Oryza indica BGIOSGA005653 I 0.638
Bo1g074680 Brassica oleracea Bo1g074680 I 0.609
Bo8g076700 Brassica oleracea Bo8g076700 I 0.609
Bostr.18473s0137 Boechera stricta Bostr.18473s0137 I 0.609
Bostr.2902s0230 Boechera stricta Bostr.2902s0230 I 0.507
Bra033767 Brassica rapa Bra033767 I 0.609
BRADI1G44520 Brachypodium distachyon BRADI1G44520 I 0.594
Brh_R005316 Buceros rhinoceros Brh_R005316 I 0.681
Brh_R011115 Buceros rhinoceros Brh_R011115 I 0.725
Cagra.1036s0060 Capsella grandiflora Cagra.1036s0060 I 0.507
Cagra.4239s0004 Capsella grandiflora Cagra.4239s0004 I 0.623
CAOG_00276 Capsaspora owczarzaki CAOG_00276 I 0.435
Carubv10001291m.g Capsella rubella Carubv10001291m.g I 0.507
Carubv10014041m.g Capsella rubella Carubv10014041m.g I 0.522
Carubv10018365m.g Capsella rubella Carubv10018365m.g I 0.623
cassava17583.valid.m1 Manihot esculenta cassava17583.valid.m1 I 0.580
cassava22158.valid.m1 Manihot esculenta cassava22158.valid.m1 I 0.565
cassava23001.valid.m1 Manihot esculenta cassava23001.valid.m1 I 0.551
Ca_15301 Cicer arietinum Ca_15301 I 0.580
CGI_10023548 Crassostrea gigas CGI_10023548 I 0.696
CGOC_0000227901 Cylicostephanus goldi CGOC_0000227901 N 0.435
chr4.LjT30K03.50.nc Lotus japonicus chr4.LjT30K03.50.nc I 0.623
Ciclev10018041m.g Citrus clementina Ciclev10018041m.g I 0.551
Cla008447 Citrullus lanatus Cla008447 I 0.478
Cla019450 Citrullus lanatus Cla019450 I 0.464
CMT433C Cyanidioschyzon merolae CMT433C I 0.609
Cmyd_10011734 Chelonia mydas Cmyd_10011734 I 0.681
Cmyd_10016427 Chelonia mydas Cmyd_10016427 I 0.710
Contig13804.0.g1 Oxytricha trifallax Contig13804.0.g1 I 0.435
Contig14878.0.g72 Oxytricha trifallax Contig14878.0.g72 I 0.435
Contig4079.0.g2 Oxytricha trifallax Contig4079.0.g2 I 0.551
Contig5499.0.g79 Oxytricha trifallax Contig5499.0.g79 I 0.551
Cucsa.098190 Cucumis sativus Cucsa.098190 I 0.609
Cucsa.197250 Cucumis sativus Cucsa.197250 I 0.565
DEL1 Arabidopsis lyrata fgenesh2_kg.5__1169__AT3G48160.2 I 0.594
DEL2 Arabidopsis lyrata Al_scaffold_0006_1397 I 0.449
DICVIV_01764 Dictyocaulus viviparus DICVIV_01764 I 0.435
E2F7 Bos taurus ENSBTAG00000016931 I 0.681
E2F7 Canis familiaris ENSCAFG00000005718 I 0.696
E2F7 Choloepus hoffmanni ENSCHOG00000004785 I 0.696
E2F7 Dasypus novemcinctus ENSDNOG00000001580 I 0.696
E2F7 Homo sapiens ENSG00000165891 D 0.681
E2F7 Loxodonta africana ENSLAFG00000017902 I 0.696
E2F7 Meleagris gallopavo ENSMGAG00000010943 I 0.667
E2F7 Monodelphis domestica ENSMODG00000020465 I 0.681
E2F7 Oryctolagus cuniculus ENSOCUG00000004932 I 0.681
E2F7 Ochotona princeps ENSOPRG00000001896 I 0.681
E2F7 Procavia capensis ENSPCAG00000000596 I 0.696
E2F7 Sus scrofa ENSSSCG00000000950 I 0.681
E2F7 Taeniopygia guttata ENSTGUG00000007515 I 0.681
e2f7 Takifugu rubripes ENSTRUG00000001843 I 0.652
E2F7 Vicugna pacos ENSVPAG00000011151 I 0.681
e2f7.L Xenopus laevis XB-GENE-1018449 I 0.710
E2F8 Anolis carolinensis ENSACAG00000015743 I 0.696
E2F8 Bos taurus ENSBTAG00000017446 I 0.696
E2F8 Canis familiaris ENSCAFG00000009431 I 0.725
E2F8 Cavia porcellus ENSCPOG00000013766 I 0.725
e2f8 Danio rerio ENSDARG00000057323 I 0.710
E2F8 Dasypus novemcinctus ENSDNOG00000003349 I 0.725
E2F8 Erinaceus europaeus ENSEEUG00000011472 I 0.725
E2F8 Gorilla gorilla ENSGGOG00000011430 I 0.710
E2F8 Loxodonta africana ENSLAFG00000022713 I 0.725
E2F8 Meleagris gallopavo ENSMGAG00000002303 I 0.696
E2F8 Myotis lucifugus ENSMLUG00000015592 I 0.739
E2f8 Mus musculus ENSMUSG00000046179 I 0.725
E2F8 Ornithorhynchus anatinus ENSOANG00000011290 I 0.725
E2F8 Oryctolagus cuniculus ENSOCUG00000004485 I 0.725
E2F8 Otolemur garnettii ENSOGAG00000005774 I 0.725
E2F8 Ochotona princeps ENSOPRG00000012881 I 0.725
e2f8 Oryzias latipes ENSORLG00000000786 I 0.710
E2F8 Pan troglodytes ENSPTRG00000003435 I 0.725
E2F8 Pteropus vampyrus ENSPVAG00000012522 I 0.725
E2f8 Rattus norvegicus ENSRNOG00000022537 I 0.725
E2F8 Sus scrofa ENSSSCG00000013352 I 0.725
E2F8 Taeniopygia guttata ENSTGUG00000015857 I 0.696
e2f8 Takifugu rubripes ENSTRUG00000015792 I 0.681
E2F8 Tursiops truncatus ENSTTRG00000005707 I 0.725
e2f8.L Xenopus laevis XB-GENE-1219153 I 0.681
E2FD Arabidopsis thaliana AT5G14960 D 0.435
E2FE Arabidopsis thaliana AT3G48160 D 0.594
E2FF Arabidopsis thaliana AT3G01330 I 0.507
ENSAMEG00000017950 Ailuropoda melanoleuca ENSAMEG00000017950 I 0.725
ENSAMXG00000016864 Astyanax mexicanus ENSAMXG00000016864 I 0.710
ENSAPLG00000009091 Anas platyrhynchos ENSAPLG00000009091 I 0.710
ENSBTAP00000022518-D1 Bos grunniens ENSBTAP00000022518-D1 I 0.681
ENSBTAP00000023190-D1 Bos grunniens ENSBTAP00000023190-D1 I 0.696
ENSCING00000014484 Ciona intestinalis ENSCING00000014484 I 0.652
ENSFALG00000010433 Ficedula albicollis ENSFALG00000010433 I 0.696
ENSGALG00000004023 Gallus gallus ENSGALG00000004023 I 0.725
ENSGALG00000010265 Gallus gallus ENSGALG00000010265 I 0.667
ENSGMOG00000016169 Gadus morhua ENSGMOG00000016169 I 0.609
ENSLACG00000014031 Latimeria chalumnae ENSLACG00000014031 I 0.667
ENSLACG00000016113 Latimeria chalumnae ENSLACG00000016113 I 0.710
ENSLOCG00000004831 Lepisosteus oculatus ENSLOCG00000004831 I 0.710
ENSLOCG00000016279 Lepisosteus oculatus ENSLOCG00000016279 I 0.652
ENSMEUG00000008461 Macropus eugenii ENSMEUG00000008461 I 0.681
ENSMPUG00000013899 Mustela putorius furo ENSMPUG00000013899 I 0.725
ENSOANG00000007449 Ornithorhynchus anatinus ENSOANG00000007449 I 0.681
ENSOARG00000008807 Ovis aries ENSOARG00000008807 I 0.725
ENSOARG00000014941 Ovis aries ENSOARG00000014941 I 0.681
ENSONIG00000007135 Oreochromis niloticus ENSONIG00000007135 I 0.710
ENSONIG00000012070 Oreochromis niloticus ENSONIG00000012070 I 0.638
ENSORLG00000012301 Oryzias latipes ENSORLG00000012301 I 0.609
ENSPFOG00000003272 Poecilia formosa ENSPFOG00000003272 I 0.638
ENSPMAG00000001858 Petromyzon marinus ENSPMAG00000001858 I 0.667
ENSPSIG00000008707 Pelodiscus sinensis ENSPSIG00000008707 I 0.696
ENSPSIG00000012629 Pelodiscus sinensis ENSPSIG00000012629 I 0.681
ENSSHAG00000002919 Sarcophilus harrisii ENSSHAG00000002919 I 0.681
ENSSTOG00000008838 Ictidomys tridecemlineatus ENSSTOG00000008838 I 0.725
ENSTSYG00000007279 Tarsius syrichta ENSTSYG00000007279 I 0.725
ENSTSYG00000008243 Tarsius syrichta ENSTSYG00000008243 I 0.667
ENSXMAG00000010237 Xiphophorus maculatus ENSXMAG00000010237 I 0.681
estExt_fgenesh2_pg.C_30256 Monosiga brevicollis estExt_fgenesh2_pg.C_30256 I 0.551
e_gw1.178.5.1 Phytophthora capsici e_gw1.178.5.1 I 0.594
F775_15908 Aegilops tauschii F775_15908 I 0.580
fgenesh1_pg.1__455 Bigelowiella natans fgenesh1_pg.1__455 I 0.522
fgenesh1_pg.scaffold_121000063 Physcomitrella patens fgenesh1_pg.scaffold_121000063 I 0.522
fgenesh2_pg.scaffold_288000044 Branchiostoma floridae fgenesh2_pg.scaffold_288000044 I 0.493
gene09494-v1.0-hybrid Fragaria vesca gene09494-v1.0-hybrid I 0.594
Gfo_R003950 Geospiza fortis Gfo_R003950 I 0.696
Gfo_R003976 Geospiza fortis Gfo_R003976 I 0.696
GLYMA04G34870 Glycine max GLYMA04G34870 I 0.522
GLYMA06G19843 Glycine max GLYMA06G19843 I 0.594
GLYMA17G10130 Glycine max GLYMA17G10130 I 0.609
GRMZM2G060000 Zea mays GRMZM2G060000 I 0.580
GRMZM2G361659 Zea mays GRMZM2G361659 I 0.609
GRMZM2G378665 Zea mays GRMZM2G378665 I 0.623
GSMUA_Achr10G29600_001 Musa acuminata GSMUA_Achr10G29600_001 I 0.565
GSPATT00002803001 Paramecium tetraurelia GSPATT00002803001 I 0.565
GUITHDRAFT_133924 Guillardia theta GUITHDRAFT_133924 I 0.667
gw1.8.144.1 Ostreococcus RCC809 gw1.8.144.1 I 0.652
HCOI01892600 Haemonchus contortus HCOI01892600 I 0.435
HelroG187766 Helobdella robusta HelroG187766 I 0.507
HPBE_0000610601 Heligmosomoides bakeri HPBE_0000610601 I 0.435
ISCW021939 Ixodes scapularis ISCW021939 I 0.638
L798_00191 Zootermopsis nevadensis L798_00191 I 0.536
LotgiG168338 Lottia gigantea LotgiG168338 I 0.681
LPERR02G26130 Leersia perrieri LPERR02G26130 I 0.638
LPERR06G08240 Leersia perrieri LPERR06G08240 I 0.609
Lus10032439.g Linum usitatissimum Lus10032439.g I 0.580
Lus10039455.g Linum usitatissimum Lus10039455.g I 0.580
Lus10042941.g Linum usitatissimum Lus10042941.g I 0.580
maker-pag1_scaffold_45-snap-gene-0.28 Pythium aphanidermatum maker-pag1_scaffold_45-snap-gene-0.28 I 0.594
maker-piw_contig_1993-fgenesh-gene-0.1 Pythium iwayamai maker-piw_contig_1993-fgenesh-gene-0.1 I 0.594
maker-pve_contig_484-snap-gene-0.19 Pythium vexans maker-pve_contig_484-snap-gene-0.19 I 0.594
MCINX015669 Melitaea cinxia MCINX015669 I 0.464
MDP0000734535 Malus domestica MDP0000734535 I 0.594
mgf007657m Mimulus guttatus mgf007657m I 0.594
mgf016204m Mimulus guttatus mgf016204m I 0.565
MLOC_67050 Hordeum vulgare MLOC_67050 I 0.580
MTR_4g106540 Medicago truncatula MTR_4g106540 I 0.565
Myotis_brandtii_E2F8_10018668 Myotis brandtii Myotis_brandtii_E2F8_10018668 I 0.739
OB02G38920 Oryza brachyantha OB02G38920 I 0.638
OBART02G31930 Oryza barthii OBART02G31930 I 0.638
OBART06G09260 Oryza barthii OBART06G09260 I 0.580
Ocbimv22037571m.g Octopus bimaculoides Ocbimv22037571m.g I 0.652
OGLUM02G32560 Oryza glumaepatula OGLUM02G32560 I 0.507
OLONG_012839 Oryza longistaminata OLONG_012839 I 0.580
OLONG_014374 Oryza longistaminata OLONG_014374 I 0.638
OMERI02G30620 Oryza meridionalis OMERI02G30620 I 0.638
ONIVA06G05110 Oryza nivara ONIVA06G05110 I 0.638
OPUNC02G29630 Oryza punctata OPUNC02G29630 I 0.638
orange1.1g018790m.g Citrus sinensis orange1.1g018790m.g I 0.551
ORGLA02G0274600 Oryza glaberrima ORGLA02G0274600 I 0.638
ORUFI02G33610 Oryza rufipogon ORUFI02G33610 I 0.638
OS02G0739700 Oryza sativa OS02G0739700 I 0.638
OSTLU_42726 Ostreococcus lucimarinus OSTLU_42726 I 0.623
Pavir.Da01202 Panicum virgatum Pavir.Da01202 I 0.580
PDK_20s1335201g002 Phoenix dactylifera PDK_20s1335201g002 I 0.594
PGSC0003DMG400001296 Solanum tuberosum PGSC0003DMG400001296 I 0.580
PGSC0003DMG402024469 Solanum tuberosum PGSC0003DMG402024469 I 0.609
PITG_06416 Phytophthora infestans PITG_06416 I 0.609
Pm024664 Prunus mume Pm024664 I 0.565
POPTR_0012s07700 Populus trichocarpa POPTR_0012s07700 I 0.580
POPTR_0015s08160 Populus trichocarpa POPTR_0015s08160 I 0.594
Pvit_06409 Pogona vitticeps Pvit_06409 I 0.696
Pvit_10252 Pogona vitticeps Pvit_10252 I 0.681
PYU1_G013070 Pythium ultimum PYU1_G013070 I 0.594
Sakowv30003251m.g Saccoglossus kowalevskii Sakowv30003251m.g I 0.710
SapurV1A.0161s0320 Salix purpurea SapurV1A.0161s0320 I 0.594
Sb04g028440 Sorghum bicolor Sb04g028440 I 0.609
Sb10g008800 Sorghum bicolor Sb10g008800 I 0.609
scaffold51-EXSNAP2012.35 Pristionchus exspectatus scaffold51-EXSNAP2012.35 I 0.449
scaffold884-EXSNAP2012.1 Pristionchus exspectatus scaffold884-EXSNAP2012.1 I 0.449
SELMODRAFT_421405 Selaginella moellendorffii SELMODRAFT_421405 I 0.623
SELMODRAFT_451530 Selaginella moellendorffii SELMODRAFT_451530 I 0.623
SMUV_0000434101 Syphacia muris SMUV_0000434101 I 0.435
Solyc02g087310.2 Solanum lycopersicum Solyc02g087310.2 I 0.580
Solyc03g113760.2 Solanum lycopersicum Solyc03g113760.2 I 0.609
SPU_023346 Strongylocentrotus purpuratus SPU_023346 I 0.696
Tal_R000495 Tyto alba Tal_R000495 I 0.681
TCM_011971 Theobroma cacao TCM_011971 I 0.594
TCM_017926 Theobroma cacao TCM_017926 I 0.522
TCNE_0000873901 Toxocara canis TCNE_0000873901 I 0.435
Thaps3973 Thalassiosira pseudonana Thaps3973 I 0.435
Thhalv10013977m.g Eutrema salsugineum Thhalv10013977m.g I 0.507
Thhalv10021032m.g Eutrema salsugineum Thhalv10021032m.g I 0.551
Traes_6DL_90C72AE92 Triticum aestivum Traes_6DL_90C72AE92 I 0.609
Traes_7BS_CCA195724 Triticum aestivum Traes_7BS_CCA195724 I 0.594
TRIUR3_05632 Triticum urartu TRIUR3_05632 I 0.609
TTHERM_01076950 Tetrahymena thermophila TTHERM_01076950 I 0.478
XP_002164164.1 Hydra magnipapillata XP_002164164.1 I 0.507