EuGene.0100010588 (Micromonas sp RCC299)
E2F

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02319 (E2F_TDP) IPR003316 EuGene.0100010588 T173926_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
estExt_gwp_gw1.C_220046
M01225_2.00 		Physcomitrella patens
VGCGCBHHNN
NNDDVGCGCB		 PBM
Lambert et al.(2019)
pTH9809 		0.763 0.763
E2f2
M00154_2.00 		Mus musculus
NDNNGCGSBN
NVSCGCNNHN		 PBM
Badis et al.(2009)
E2F2_1022 		0.746 0.746
E2F3
M01964_2.00 		Taeniopygia guttata
NNSGCGCGMN
NKCGCGCSNN		 PBM
Weirauch et al.(2014)
pTH9288 		0.746 0.746
e_gw1.38.2.1
M01968_2.00 		Physcomitrella patens
NSGCGCBHHN
NDDVGCGCSN		 PBM
Weirauch et al.(2014)
pTH5707 		0.746 0.746
E2FC
M06870_2.00 		Arabidopsis thaliana
AWDDDGGCGCCAAAR
YTTTGGCGCCHHHWT		 Dap-seq
OMalley et al.(2016)
E2FC_col_a 		0.746 0.746
E2f2
M09039_2.00 		Mus musculus
GGCGCGMAWC
GWTKCGCGCC		 Misc
Kulakovskiy et al.(2013)
E2F2_MOUSE.H11MO.0.B 		0.746 0.746
ENSACAG00000013716
M01960_2.00 		Anolis carolinensis
HNVGCGCBND
HNVGCGCBND		 PBM
Weirauch et al.(2014)
pTH9221 		0.729 0.729
E2F2
M01961_2.00 		Homo sapiens
DNSGCGCSNH
DNSGCGCSNH		 PBM
Weirauch et al.(2014)
pTH9195 		0.729 0.729
E2f3
M00153_2.00 		Mus musculus
NNNNGCGSNN
NNSCGCNNNN		 PBM
Badis et al.(2009)
E2F3_3752 		0.729 0.729
E2F2
M01963_2.00 		Tupaia belangeri
WDVGCGCBHW
WDVGCGCBHW		 PBM
Weirauch et al.(2014)
pTH9291 		0.729 0.729
E2F2
M02949_2.00 		Homo sapiens
AAAAATGGCGCCAAAAWD
HWTTTTGGCGCCATTTTT		 SELEX
Jolma et al.(2013)
E2F2_1 		0.729 0.729
E2F2
M02950_2.00 		Homo sapiens
VDTTTTGGCGCCAAAAHN
NDTTTTGGCGCCAAAAHB		 SELEX
Jolma et al.(2013)
E2F2_2 		0.729 0.729
E2F2
M02951_2.00 		Homo sapiens
AAAWWGGCGCCAWTTT
AAAWTGGCGCCWWTTT		 SELEX
Jolma et al.(2013)
E2F2_3 		0.729 0.729
E2F3
M02956_2.00 		Homo sapiens
RAAAAKGGCGCCAAAANN
NNTTTTGGCGCCMTTTTY		 SELEX
Jolma et al.(2013)
E2F3_1 		0.729 0.729
E2F3
M02957_2.00 		Homo sapiens
DAAAADGGCGCCMWWTTY
RAAWWKGGCGCCHTTTTH		 SELEX
Jolma et al.(2013)
E2F3_2 		0.729 0.729
E2F3
M02958_2.00 		Homo sapiens
NDTTTTGGCGCCAAAABH
DVTTTTGGCGCCAAAAHN		 SELEX
Jolma et al.(2013)
E2F3_3 		0.729 0.729
E2F3
M04701_2.00 		Homo sapiens
DWTTTGGCGCCAAAWH
DWTTTGGCGCCAAAWH		 SELEX
Yin et al.(2017)
E2F3_eDBD_HT-SELEX 		0.729 0.729
E2F2
M04696_2.00 		Homo sapiens
GCGCGCGCSYW
WRSGCGCGCGC		 SELEX
Yin et al.(2017)
E2F2_eDBD_HT-SELEX_1 		0.729 0.729
E2F2
M04697_2.00 		Homo sapiens
NDWWDGGCGCCWWHWN
NWDWWGGCGCCHWWHN		 SELEX
Yin et al.(2017)
E2F2_eDBD_HT-SELEX_2 		0.729 0.729
E2FA
M06871_2.00 		Arabidopsis thaliana
NDDDGGCGCCAWWW
WWWTGGCGCCHHHN		 Dap-seq
OMalley et al.(2016)
E2FA_col_a 		0.729 0.729
E2FA
M06872_2.00 		Arabidopsis thaliana
DDWDGGCGCCAWAD
HTWTGGCGCCHWHH		 Dap-seq
OMalley et al.(2016)
E2FA_colamp_a 		0.729 0.729
E2FA
M08106_2.00 		Arabidopsis thaliana
NVGCGCCAHN
NDTGGCGCBN		 ChIP-seq
Mathelier et al.(2014)
MA1414.1 		0.729 0.729
E2F2
M09029_2.00 		Homo sapiens
GGCGCGMAWC
GWTKCGCGCC		 Misc
Kulakovskiy et al.(2013)
E2F2_HUMAN.H11MO.0.B 		0.729 0.729
E2F3
M09031_2.00 		Homo sapiens
NDGGCGGGAAR
YTTCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F3_HUMAN.H11MO.0.A 		0.729 0.729
E2f3
M09038_2.00 		Mus musculus
DSGCGGGARV
BYTCCCGCSH		 Misc
Kulakovskiy et al.(2013)
E2F3_MOUSE.H11MO.0.A 		0.729 0.729
E2F3
M10454_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F1_Q6_01 		0.729 0.729
E2F3
M10455_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F3_Q6 		0.729 0.729
E2F3
M04702_2.00 		Homo sapiens
DTTTTGGCGCCAAAAH
DTTTTGGCGCCAAAAH		 SELEX
Yin et al.(2017)
E2F3_eDBD_Methyl-HT-SELEX 		0.729 0.729
E2F2
M04698_2.00 		Homo sapiens
SGBGSGCGCGS
SCGCGCSCVCS		 SELEX
Yin et al.(2017)
E2F2_eDBD_Methyl-HT-SELEX_1 		0.729 0.729
E2F2
M04699_2.00 		Homo sapiens
DWWWDGGCGCCAAAWH
DWTTTGGCGCCHWWWH		 SELEX
Yin et al.(2017)
E2F2_eDBD_Methyl-HT-SELEX_2 		0.729 0.729
ENSOANG00000014967
M01962_2.00 		Ornithorhynchus anatinus
NDSGCGCSHN
NDSGCGCSHN		 PBM
Weirauch et al.(2014)
pTH9382 		0.712 0.712
E2F4
M02961_2.00 		Homo sapiens
AATGGCGCCAAA
TTTGGCGCCATT		 SELEX
Jolma et al.(2013)
E2F4_1 		0.712 0.712
E2F4
M02962_2.00 		Homo sapiens
TTTGGCGCCAAA
TTTGGCGCCAAA		 SELEX
Jolma et al.(2013)
E2F4_2 		0.712 0.712
E2F4
M04707_2.00 		Homo sapiens
NWWKGGCGCCAAAW
WTTTGGCGCCMWWN		 SELEX
Yin et al.(2017)
E2F4_eDBD_HT-SELEX 		0.712 0.712
E2F4
M08109_2.00 		Homo sapiens
NSGCGGGARVN
NBYTCCCGCSN		 ChIP-seq
Mathelier et al.(2014)
MA0470.1 		0.712 0.712
E2F4
M07942_2.00 		Homo sapiens
SGCGSGARDNNBNVN
NBNVNNHYTCSCGCS		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_E2F4_UCD 		0.712 0.712
E2F4
M07943_2.00 		Homo sapiens
SGCGGGARDNNBVVN
NBBVNNHYTCCCGCS		 ChIP-seq
Gerstein et al.(2012)
K562b_E2F4_UCD 		0.712 0.712
E2F4
M09036_2.00 		Homo sapiens
VDRGGCGGGRVND
HNBYCCCGCCYHB		 Misc
Kulakovskiy et al.(2013)
E2F4_HUMAN.H11MO.0.A 		0.712 0.712
E2f4
M09037_2.00 		Mus musculus
NRDDGGCGGGRMNN
NNKYCCCGCCHHYN		 Misc
Kulakovskiy et al.(2013)
E2F4_MOUSE.H11MO.0.A 		0.712 0.712
E2F4
M09524_2.00 		Homo sapiens
VGCGSGAADH
DHTTCSCGCB		 Misc
Heinz et al.(2010)
K562-E2F4_GSE31477 		0.712 0.712
E2F4
M10457_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F4_05 		0.712 0.712
E2F4
M10458_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F4_Q3 		0.712 0.712
E2F4
M10459_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F4_Q6 		0.712 0.712
efl-1
M08110_2.00 		Caenorhabditis elegans
HNHNSGCGSSAAWWN
NWWTTSSCGCSNDND		 ChIP-seq
Mathelier et al.(2014)
MA0541.1 		0.695 0.695
efl-1
M08197_2.00 		Caenorhabditis elegans
BGCGSSAAWW
WWTTSSCGCV		 ChIP-seq
Contrino et al.(2012)
Mw140 		0.695 0.695
E2f1
M09041_2.00 		Mus musculus
NDDGGCGGGRVN
NBYCCCGCCHHN		 Misc
Kulakovskiy et al.(2013)
E2F1_MOUSE.H11MO.0.A 		0.695 0.695
E2f5
M09042_2.00 		Mus musculus
NGCGCSAAAN
NTTTSGCGCN		 Misc
Kulakovskiy et al.(2013)
E2F5_MOUSE.H11MO.0.B 		0.695 0.695
efl-1
M09526_2.00 		Caenorhabditis elegans
WGCAARYGCGCTCYA
TRGAGCGCRYTTGCW		 Misc
Heinz et al.(2010)
cElegans-L1-EFL1_modEncode 		0.695 0.695
GSPATT00020286001
M01965_2.00 		Paramecium tetraurelia
NNSGCGSBN
NVSCGCSNN		 PBM
Weirauch et al.(2014)
pTH5647 		0.678 0.678
E2F1
M02952_2.00 		Homo sapiens
WWDGGCGCCAAW
WTTGGCGCCHWW		 SELEX
Jolma et al.(2013)
E2F1_1 		0.678 0.678
E2F1
M02953_2.00 		Homo sapiens
WWKGGCGCCWWW
WWWGGCGCCMWW		 SELEX
Jolma et al.(2013)
E2F1_2 		0.678 0.678
E2F1
M02954_2.00 		Homo sapiens
WWWKGGCGCCMWWW
WWWKGGCGCCMWWW		 SELEX
Jolma et al.(2013)
E2F1_3 		0.678 0.678
E2F1
M02955_2.00 		Homo sapiens
AAWKGGCGCCAWTW
WAWTGGCGCCMWTT		 SELEX
Jolma et al.(2013)
E2F1_4 		0.678 0.678
E2F1
M04700_2.00 		Homo sapiens
NWWWDGGCGCCAAAWH
DWTTTGGCGCCHWWWN		 SELEX
Yin et al.(2017)
E2F1_FL_HT-SELEX 		0.678 0.678
E2F1
M07938_2.00 		Homo sapiens
VRRVNRVGCGSGMDS
SHKCSCGCBYNBYYB		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_E2F1_UCD 		0.678 0.678
E2F1
M09030_2.00 		Homo sapiens
NVNDGGCGGGARVN
NBYTCCCGCCHNBN		 Misc
Kulakovskiy et al.(2013)
E2F1_HUMAN.H11MO.0.A 		0.678 0.678
E2F1
M09521_2.00 		Homo sapiens
NNGGCGGGAA
TTCCCGCCNN		 Misc
Heinz et al.(2010)
Hela-E2F1_GSE22478 		0.678 0.678
E2F1
M10444_2.00 		Homo sapiens
THVGCGCGAAAAHKR
YMDTTTTCGCGCBDA		 Transfac
Matys et al.(2006)
V$E2F_01 		0.678 0.678
E2F1
M10445_2.00 		Homo sapiens
BHKSGCGCSAAA
TTTSGCGCSMDV		 Transfac
Matys et al.(2006)
V$E2F_03 		0.678 0.678
E2F1
M10446_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F1_01 		0.678 0.678
E2F1
M10447_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F1_02 		0.678 0.678
E2F1
M10448_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F1_Q3_01 		0.678 0.678
E2F1
M10449_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F1_Q3 		0.678 0.678
E2F1
M10450_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F1_Q4_01 		0.678 0.678
E2F1
M10451_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F1_Q4_02 		0.678 0.678
E2F1
M10452_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F1_Q4 		0.678 0.678
E2F1
M10453_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F1_Q6 		0.678 0.678
E2f
M08196_2.00 		Drosophila melanogaster
AAWWBSSCGSCAA
TTGSCGSSVWWTT		 ChIP-seq
Contrino et al.(2012)
Mf10 		0.627 0.627
E2F
M01959_2.00 		Dictyostelium discoideum
NNGSGCGCSHN
NDSGCGCSCNN		 PBM
Weirauch et al.(2014)
pTH5403 		0.593 0.593
E2F6
M08107_2.00 		Homo sapiens
DGGMGGGARVN
NBYTCCCKCCH		 ChIP-seq
Mathelier et al.(2014)
MA0471.1 		0.576 0.576
E2F6
M07939_2.00 		Homo sapiens
NDSGCGGGARV
BYTCCCGCSHN		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_E2F6_UCD 		0.576 0.576
E2F6
M07940_2.00 		Homo sapiens
NDVGCGGGARV
BYTCCCGCBHN		 ChIP-seq
Gerstein et al.(2012)
K562b_E2F6_UCD 		0.576 0.576
E2F6
M07941_2.00 		Homo sapiens
NDSGCGGGARV
BYTCCCGCSHN		 ChIP-seq
Gerstein et al.(2012)
K562_E2F6_HudsonAlpha 		0.576 0.576
E2F6
M09034_2.00 		Homo sapiens
NRGGMGGGARRNN
NNYYTCCCKCCYN		 Misc
Kulakovskiy et al.(2013)
E2F6_HUMAN.H11MO.0.A 		0.576 0.576
E2f6
M09043_2.00 		Mus musculus
NDGGCGGGARVV
BBYTCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F6_MOUSE.H11MO.0.A 		0.576 0.576
E2F6
M09523_2.00 		Homo sapiens
VGCGGGARNN
NNYTCCCGCB		 Misc
Heinz et al.(2010)
Hela-E2F6_GSE31477 		0.576 0.576
E2F6
M10456_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F6_01 		0.576 0.576
estExt_gwp_GeneWisePlus.C_Chr_02.00010270
M01969_2.00 		Ostreococcus tauri
HRVGCGCCNN
NNGGCGCBYD		 PBM
Weirauch et al.(2014)
pTH5701 		0.525 0.525
efl-2
M01966_2.00 		Caenorhabditis elegans
NDBGCGSBNN
NNVSCGCVHN		 PBM
Weirauch et al.(2014)
pTH5916 		0.475 0.475
efl-2
M00662_2.00 		Caenorhabditis elegans
NSGCGSNNDN
NHNNSCGCSN		 PBM
Narasimhan et al.(2015)
pTH9173 		0.475 0.475
TVAG_062990
M01967_2.00 		Trichomonas vaginalis
NNSGCGSBNN
NNVSCGCSNN		 PBM
Weirauch et al.(2014)
pTH5727 		0.441 0.441
For this family, TFs with SR scores > 0.429 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
55361 E2F 16 74

Links

Other E2F family TFs
Other Micromonas sp RCC299 TFs

1017 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AC233850.1_FG005 Zea mays AC233850.1_FG005 I 0.662
BGIOSGA006304 Oryza indica BGIOSGA006304 I 0.662
Bo9g106030 Brassica oleracea Bo9g106030 I 0.746
Bra002398 Brassica rapa Bra002398 I 0.746
Chro.10180 Cryptosporidium hominis Chro.10180 N 0.000
Cla018710 Citrullus lanatus Cla018710 I 0.763
CMU_036300 Cryptosporidium muris CMU_036300 I 0.000
Contig21974.0.g77 Oxytricha trifallax Contig21974.0.g77 I 0.610
Cucsa.083720 Cucumis sativus Cucsa.083720 I 0.763
DME_0000454601 Dracunculus medinensis DME_0000454601 I 0.492
e_gw1.364.12.1 Physcomitrella patens e_gw1.364.12.1 I 0.677
F775_07838 Aegilops tauschii F775_07838 I 0.695
fgenesh2_pg.2_#_1160 Fragilariopsis cylindrus fgenesh2_pg.2_#_1160 I 0.576
maker-piw_contig_136-snap-gene-0.25 Pythium iwayamai maker-piw_contig_136-snap-gene-0.25 I 0.729
OB02G27210 Oryza brachyantha OB02G27210 I 0.662
OBART02G19430 Oryza barthii OBART02G19430 I 0.662
OGLUM02G19730 Oryza glumaepatula OGLUM02G19730 I 0.662
OLONG_023990 Oryza longistaminata OLONG_023990 I 0.662
OMERI02G19320 Oryza meridionalis OMERI02G19320 I 0.662
ONIVA02G21500 Oryza nivara ONIVA02G21500 I 0.662
OPUNC02G17370 Oryza punctata OPUNC02G17370 I 0.662
ORGLA02G0166600 Oryza glaberrima ORGLA02G0166600 I 0.662
ORUFI02G20490 Oryza rufipogon ORUFI02G20490 I 0.662
OS02G0537500 Oryza sativa OS02G0537500 I 0.662
OSTLU_119601 Ostreococcus lucimarinus OSTLU_119601 I 0.593
Pavir.Ab01863 Panicum virgatum Pavir.Ab01863 I 0.677
Pavir.Ga01887 Panicum virgatum Pavir.Ga01887 I 0.661
Pavir.J29330 Panicum virgatum Pavir.J29330 I 0.695
Pavir.J38646 Panicum virgatum Pavir.J38646 I 0.729
Ppa-efl-2 Pristionchus pacificus PPA00217 I 0.542
Sb04g021970 Sorghum bicolor Sb04g021970 I 0.662
scaffold491-EXSNAP2012.7 Pristionchus exspectatus scaffold491-EXSNAP2012.7 I 0.542
Si017108m.g Setaria italica Si017108m.g I 0.662
Traes_2AL_8EC530273 Triticum aestivum Traes_2AL_8EC530273 I 0.695
Traes_2BL_1E7B7A8CA Triticum aestivum Traes_2BL_1E7B7A8CA I 0.695
Traes_2DL_BD8048C15 Triticum aestivum Traes_2DL_BD8048C15 I 0.695
TRE_0001857001 Trichobilharzia regenti TRE_0001857001 I 0.644