CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

EFV53694 *(Trichinella spiralis)* Forkhead
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00250 (Forkhead)	IPR001766	EFV53694	T185059_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
FOXD3 M03044_2.00	Homo sapiens	NRTMAAYRTTWDYN	NRHWAAYRTTKAYN	SELEX Jolma et al.(2013) FOXD3_1	0.829	0.919
FOXD3 M03045_2.00	Homo sapiens	RTAAAYA	TRTTTAY	SELEX Jolma et al.(2013) FOXD3_2	0.829	0.919
FOXD3 M04855_2.00	Homo sapiens	VHWRHRTAMACW	WGTKTAYDYWDB	SELEX Yin et al.(2017) FOXD3_eDBD_HT-SELEX	0.829	0.919
Foxd3 M09114_2.00	Mus musculus	DVNWRDRNAAACAVN	NBTGTTTNYHYWNBH	Misc Kulakovskiy et al.(2013) FOXD3_MOUSE.H11MO.0.C	0.829	0.919
FOXD3 M10565_2.00	Homo sapiens	RADHAAAYAWWH	DWWTRTTTDHTY	Transfac Matys et al.(2006) V$FOXD3_01	0.829	0.919
FOXD3 M10566_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HFH2_Q5	0.829	0.919
FOXD3 M04856_2.00	Homo sapiens	VYWRHRTAAACW	WGTTTAYDYWRB	SELEX Yin et al.(2017) FOXD3_eDBD_Methyl-HT-SELEX	0.829	0.919
foxe3 M01228_2.00	Xenopus tropicalis	WNNVHHMAYW	WRTKDDBNNW	PBM Lambert et al.(2019) pTH9824	0.822	0.791
fd59A M03739_2.00	Drosophila melanogaster	HWAWRTAAACAWW	WWTGTTTAYWTWD	SELEX Nitta et al.(2015) fd59A_1	0.813	0.860
fd59A M03740_2.00	Drosophila melanogaster	WWAVAATAACAHN	NDTGTTATTBTWW	SELEX Nitta et al.(2015) fd59A_2	0.813	0.860
fd59A M03741_2.00	Drosophila melanogaster	YWRWRTAAAYAHH	DDTRTTTAYWYWR	SELEX Nitta et al.(2015) fd59A_3	0.813	0.860
fd59A M03742_2.00	Drosophila melanogaster	MWACAAYAAYAHW	WDTRTTRTTGTWK	SELEX Nitta et al.(2015) fd59A_4	0.813	0.860
FOXE1 M04845_2.00	Homo sapiens	BVYTAWRYAAACADN	NHTGTTTRYWTARBV	SELEX Yin et al.(2017) FOXE1_eDBD_HT-SELEX	0.804	0.698
FOXE1 M04846_2.00	Homo sapiens	BVYTAARYAAACAWH	DWTGTTTRYTTARBV	SELEX Yin et al.(2017) FOXE1_eDBD_Methyl-HT-SELEX	0.804	0.698
FOXD2 M03042_2.00	Homo sapiens	NRTMAAYRTTWDYN	NRHWAAYRTTKAYN	SELEX Jolma et al.(2013) FOXD2_1	0.797	0.884
FOXD2 M03043_2.00	Homo sapiens	RTAAAYA	TRTTTAY	SELEX Jolma et al.(2013) FOXD2_2	0.797	0.884
FOXD2 M04851_2.00	Homo sapiens	HWASAATAAYAWWN	NWWTRTTATTSTWD	SELEX Yin et al.(2017) FOXD2_eDBD_HT-SELEX_1	0.797	0.884
FOXD2 M04852_2.00	Homo sapiens	VYWANRTAAAYAH	DTRTTTAYNTWRB	SELEX Yin et al.(2017) FOXD2_eDBD_HT-SELEX_2	0.797	0.884
FOXD1 M02681_2.00	Homo sapiens	GTAAACAD	HTGTTTAC	SELEX Mathelier et al.(2014) MA0031.1	0.797	0.884
Foxd1 M10570_2.00	Mus musculus	SYWAWGTAAACADHVN	NBDHTGTTTACWTWRS	Transfac Matys et al.(2006) V$FREAC4_01	0.797	0.884
FOXD1 M10567_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FREAC4_02	0.797	0.884
FOXD2 M04853_2.00	Homo sapiens	HWACAATAACRWWN	NWWYGTTATTGTWD	SELEX Yin et al.(2017) FOXD2_eDBD_Methyl-HT-SELEX_1	0.797	0.884
FOXD2 M04854_2.00	Homo sapiens	RYTRNGTMAACRD	HYGTTKACNYARY	SELEX Yin et al.(2017) FOXD2_eDBD_Methyl-HT-SELEX_2	0.797	0.884
FOXL1 M03034_2.00	Homo sapiens	RTAAACA	TGTTTAY	SELEX Jolma et al.(2013) FOXL1_1	0.795	0.686
FOXL1 M03035_2.00	Homo sapiens	NRTAAAYAAAYAN	NTRTTTRTTTAYN	SELEX Jolma et al.(2013) FOXL1_2	0.795	0.686
FOXL1 M10558_2.00	Homo sapiens	DHNVHATAAAYAHNNN	NNNDTRTTTATDBNDH	Transfac Matys et al.(2006) V$FREAC7_01	0.795	0.686
Foxl1 M00164_2.00	Mus musculus	NNNRTMAAYA	TRTTKAYNNN	PBM Badis et al.(2009) Foxl1_2809	0.795	0.674
Foxc2 M00796_2.00	Mus musculus	HNNRHMAAYA	TRTTKDYNND	PBM Weirauch et al.(2013) pTH3796	0.793	0.721
FOXC2 M03036_2.00	Homo sapiens	NRTMAATATTDWYN	NRWHAATATTKAYN	SELEX Jolma et al.(2013) FOXC2_1	0.793	0.721
FOXC2 M03037_2.00	Homo sapiens	RTAAAYAAACA	TGTTTRTTTAY	SELEX Jolma et al.(2013) FOXC2_2	0.793	0.721
FOXC2 M03038_2.00	Homo sapiens	WAHRTMAAYAWW	WWTRTTKAYDTW	SELEX Jolma et al.(2013) FOXC2_3	0.793	0.721
FOXC2 M04841_2.00	Homo sapiens	NHVNRYMAACAH	DTGTTKRYNBDN	SELEX Yin et al.(2017) FOXC2_eDBD_HT-SELEX_1	0.793	0.721
FOXC2 M04842_2.00	Homo sapiens	RHAMAYAAACAH	DTGTTTRTKTDY	SELEX Yin et al.(2017) FOXC2_eDBD_HT-SELEX_2	0.793	0.721
FOXC2 M10559_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FKHL14_Q2	0.793	0.721
FOXC2 M04843_2.00	Homo sapiens	NHNNRYMAACAN	NTGTTKRYNNDN	SELEX Yin et al.(2017) FOXC2_eDBD_Methyl-HT-SELEX_1	0.793	0.721
FOXC2 M04844_2.00	Homo sapiens	VHMMAYAAACAN	NTGTTTRTKKDB	SELEX Yin et al.(2017) FOXC2_eDBD_Methyl-HT-SELEX_2	0.793	0.721
FOXD4L4 M10564_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXD4L4_01	0.792	0.849
FOXC1 M00257_2.00	Homo sapiens	NNNVHHAAYA	TRTTDDBNNN	PBM Barrera et al.(2016) FOXC1_REF	0.768	0.698
Foxc1 M01982_2.00	Mus musculus	HNNRHMAAYA	TRTTKDYNND	PBM Weirauch et al.(2014) pTH2673	0.768	0.698
FOXC1 M03013_2.00	Homo sapiens	AWRTAAAYAAAYA	TRTTTRTTTAYWT	SELEX Jolma et al.(2013) FOXC1_1	0.768	0.698
FOXC1 M03014_2.00	Homo sapiens	NRWMAATATTKWYN	NRWMAATATTKWYN	SELEX Jolma et al.(2013) FOXC1_2	0.768	0.698
FOXC1 M03015_2.00	Homo sapiens	WRWRTMAAYAW	WTRTTKAYWYW	SELEX Jolma et al.(2013) FOXC1_3	0.768	0.698
Foxc1 M03059_2.00	Mus musculus	RTAAAYAAACA	TGTTTRTTTAY	SELEX Jolma et al.(2013) Foxc1_1	0.768	0.698
Foxc1 M03060_2.00	Mus musculus	RTAAACA	TGTTTAY	SELEX Jolma et al.(2013) Foxc1_2	0.768	0.698
FOXC1 M09083_2.00	Homo sapiens	SBWAWRTAAACADHN	NDHTGTTTAYWTWVS	Misc Kulakovskiy et al.(2013) FOXC1_HUMAN.H11MO.0.C	0.768	0.698
Foxc1 M09111_2.00	Mus musculus	SBWAWRTAAACADHN	NDHTGTTTAYWTWVS	Misc Kulakovskiy et al.(2013) FOXC1_MOUSE.H11MO.0.C	0.768	0.698
FOXC1 M10525_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXC1_Q4	0.768	0.698
FOXC1 M10526_2.00	Homo sapiens	TSTTTATTTACDBNVN	NBNVHGTAAATAAASA	Transfac Matys et al.(2006) V$FREAC3_01	0.768	0.698
FOXC1 M00253_2.00	Homo sapiens	NNHATAAWHAN	NTDWTTATDNN	PBM Barrera et al.(2016) FOXC1_F112S	0.768	0.686
FOXC1 M00255_2.00	Homo sapiens	NRTATATWHNNN	NNNDWATATAYN	PBM Barrera et al.(2016) FOXC1_L130F	0.768	0.686
FOXC1 M00256_2.00	Homo sapiens	NNNNWWTYAMAWN	NWTKTRAWWNNNN	PBM Barrera et al.(2016) FOXC1_P79L	0.768	0.686
FOXC1 M00258_2.00	Homo sapiens	NNNAMAAYANN	NNTRTTKTNNN	PBM Barrera et al.(2016) FOXC1_S131L	0.768	0.686
FOXC1 M00259_2.00	Homo sapiens	RTAAACAW	WTGTTTAY	PBM Barrera et al.(2016) FOXC1_S82T	0.768	0.686
Gm5294 M01984_2.00	Mus musculus	NNKRTAAACANN	NNTGTTTAYMNN	PBM Weirauch et al.(2014) pTH3802	0.755	0.628
FOXC1 M00254_2.00	Homo sapiens	RRTAAACANN	NNTGTTTAYY	PBM Barrera et al.(2016) FOXC1_I126M	0.744	0.686
fd64A M06197_2.00	Drosophila melanogaster	KVWAAACA	TGTTTWBM	B1H Zhu et al.(2011) fd64A_SANGER_5_FBgn0004895	0.742	0.651
FOXF2 M02680_2.00	Homo sapiens	BNHNSRTAAACAHN	NDTGTTTAYSNDNV	SELEX Mathelier et al.(2014) MA0030.1	0.739	0.628
FOXF2 M10548_2.00	Homo sapiens	BNHNBRTAAACAHNVN	NBNDTGTTTAYVNDNV	Transfac Matys et al.(2006) V$FREAC2_01	0.739	0.628
FOXL2 M04847_2.00	Homo sapiens	NVBGHMAACAH	DTGTTKDCVBN	SELEX Yin et al.(2017) FOXL2_FL_HT-SELEX	0.737	0.663
Foxl2 M09112_2.00	Mus musculus	DWDWRTAAACA	TGTTTAYWHWH	Misc Kulakovskiy et al.(2013) FOXL2_MOUSE.H11MO.0.C	0.737	0.663
FOXL2 M10560_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXL2_Q2	0.737	0.663
FOXL2 M10561_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXL2_Q5	0.737	0.663
FOXL2 M04848_2.00	Homo sapiens	HVCGWMAACAH	DTGTTKWCGBD	SELEX Yin et al.(2017) FOXL2_FL_Methyl-HT-SELEX	0.737	0.663
let-381 M00664_2.00	Caenorhabditis elegans	RTAAACAW	WTGTTTAY	PBM Narasimhan et al.(2015) pTH9057	0.737	0.488
FOXF1 M10529_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FKHL5_Q3	0.734	0.628
FOXF1 M10530_2.00	Homo sapiens	YRHATAAACAHNB	VNDTGTTTATDYR	Transfac Matys et al.(2006) V$HFH8_01	0.734	0.628
FOXG1 M01978_2.00	Homo sapiens	RTAAACAH	DTGTTTAY	PBM Weirauch et al.(2014) pTH5501	0.720	0.709
Foxg1 M00791_2.00	Mus musculus	NNNNMHAYAN	NTRTDKNNNN	PBM Weirauch et al.(2013) pTH2846	0.720	0.709
FOXG1 M03032_2.00	Homo sapiens	RTAAACAATDGTAAACA	TGTTTACHATTGTTTAY	SELEX Jolma et al.(2013) FOXG1_1	0.720	0.709
FOXG1 M03033_2.00	Homo sapiens	RCGGACACAATR	YATTGTGTCCGY	SELEX Jolma et al.(2013) FOXG1_2	0.720	0.709
Foxg1 M03052_2.00	Mus musculus	ATAAACAAVTGTMAACA	TGTTKACABTTGTTTAT	SELEX Jolma et al.(2013) Foxg1_1	0.720	0.709
Foxg1 M03053_2.00	Mus musculus	MHGGACACAATC	GATTGTGTCCDK	SELEX Jolma et al.(2013) Foxg1_2	0.720	0.709
Foxg1 M03054_2.00	Mus musculus	GTAAACA	TGTTTAC	SELEX Jolma et al.(2013) Foxg1_3	0.720	0.709
FOXG1 M04839_2.00	Homo sapiens	NACRYMMACAH	DTGTKKRYGTN	SELEX Yin et al.(2017) FOXG1_eDBD_HT-SELEX	0.720	0.709
FOXG1 M04840_2.00	Homo sapiens	HRCGYMAACAH	DTGTTKRCGYD	SELEX Yin et al.(2017) FOXG1_eDBD_Methyl-HT-SELEX	0.720	0.709
foxg1a M01985_2.00	Oryzias latipes	RTAAACAH	DTGTTTAY	PBM Weirauch et al.(2014) pTH6729	0.713	0.674
CBG14280 M01974_2.00	Caenorhabditis briggsae	RTAAACAN	NTGTTTAY	PBM Weirauch et al.(2014) pTH6734	0.710	0.628
slp1 M01986_2.00	Drosophila melanogaster	NRTAAACANN	NNTGTTTAYN	PBM Weirauch et al.(2014) pTH6549	0.705	0.616
slp1 M03736_2.00	Drosophila melanogaster	WDYRTAAACAWW	WWTGTTTAYRHW	SELEX Nitta et al.(2015) slp1_1	0.705	0.616
slp1 M03737_2.00	Drosophila melanogaster	RTRTAAACAAAYADH	DHTRTTTGTTTAYAY	SELEX Nitta et al.(2015) slp1_2	0.705	0.616
slp1 M06474_2.00	Drosophila melanogaster	WRBVWAAACAH	DTGTTTWBVYW	B1H Mathelier et al.(2014) MA0458.1	0.705	0.616
slp1 M06195_2.00	Drosophila melanogaster	WRBVWAAACAH	DTGTTTWBVYW	B1H Zhu et al.(2011) slp1_NAR_FBgn0003430	0.705	0.616
slp1 M09669_2.00	Drosophila melanogaster	ATGTMAACAMAVV	BBTKTGTTKACAT	Misc Kulakovskiy et al.(2009) slp1	0.705	0.616
croc M03744_2.00	Drosophila melanogaster	WRYGTMAACAH	DTGTTKACRYW	SELEX Nitta et al.(2015) croc_1	0.703	0.674
croc M10571_2.00	Drosophila melanogaster	HWNARTAAATAKNNNV	BNNNMTATTTAYYNWD	Transfac Matys et al.(2006) I$CROC_01	0.703	0.674
bin M03752_2.00	Drosophila melanogaster	HTAATGTAAACAAW	WTTGTTTACATTAD	SELEX Nitta et al.(2015) bin_1	0.696	0.488
bin M06199_2.00	Drosophila melanogaster	TAAACARVGA	TCBYTGTTTA	B1H Zhu et al.(2011) bin_FlyReg_FBgn0045759	0.696	0.488
bin M06200_2.00	Drosophila melanogaster	RTAAACA	TGTTTAY	B1H Zhu et al.(2011) bin_SANGER_5_FBgn0045759	0.696	0.488
FOXI1 M03026_2.00	Homo sapiens	GTAAACA	TGTTTAC	SELEX Jolma et al.(2013) FOXI1_1	0.693	0.628
FOXI1 M03027_2.00	Homo sapiens	RTGTKTACGGTAAACAA	TTGTTTACCGTAMACAY	SELEX Jolma et al.(2013) FOXI1_2	0.693	0.628
FOXI1 M04827_2.00	Homo sapiens	NNNNNRTMAACAN	NTGTTKAYNNNNN	SELEX Yin et al.(2017) FOXI1_eDBD_HT-SELEX	0.693	0.628
FOXI1 M04829_2.00	Homo sapiens	AAYGTAAACAMW	WKTGTTTACRTT	SELEX Yin et al.(2017) FOXI1_FL_HT-SELEX	0.693	0.628
FOXI1 M09095_2.00	Homo sapiens	RRCCAATCAVAD	HTBTGATTGGYY	Misc Kulakovskiy et al.(2013) FOXI1_HUMAN.H11MO.0.B	0.693	0.628
FOXI1 M10556_2.00	Homo sapiens	HAWAYAAAYAHVH	DBDTRTTTRTWTD	Transfac Matys et al.(2006) V$HFH3_01	0.693	0.628
FOXI1 M04828_2.00	Homo sapiens	NWWVHRTAAACAH	DTGTTTAYDBWWN	SELEX Yin et al.(2017) FOXI1_eDBD_Methyl-HT-SELEX	0.693	0.628
FOXI1 M04830_2.00	Homo sapiens	AAYRTAAACAAW	WTTGTTTAYRTT	SELEX Yin et al.(2017) FOXI1_FL_Methyl-HT-SELEX	0.693	0.628
Foxi1 M09109_2.00	Mus musculus	RRCCAATCAVAD	HTBTGATTGGYY	Misc Kulakovskiy et al.(2013) FOXI1_MOUSE.H11MO.0.B	0.693	0.616
FOXJ3 M03046_2.00	Homo sapiens	RTAAAVAA	TTBTTTAY	SELEX Jolma et al.(2013) FOXJ3_1	0.692	0.593
FOXJ3 M03047_2.00	Homo sapiens	GTAAACARTMAACA	TGTTKAYTGTTTAC	SELEX Jolma et al.(2013) FOXJ3_2	0.692	0.593
FOXJ3 M03048_2.00	Homo sapiens	GTAAACATAAACA	TGTTTATGTTTAC	SELEX Jolma et al.(2013) FOXJ3_3	0.692	0.593
FOXJ3 M02736_2.00	Homo sapiens	AAACAATAAACA	TGTTTATTGTTT	SELEX Jolma et al.(2010) FOXJ3_dimer	0.692	0.593
FOXJ3 M02737_2.00	Homo sapiens	RTAAACAW	WTGTTTAY	SELEX Jolma et al.(2010) FOXJ3_monomer	0.692	0.593
FOXJ3 M04859_2.00	Homo sapiens	DYGTMAACAH	DTGTTKACRH	SELEX Yin et al.(2017) FOXJ3_eDBD_HT-SELEX	0.692	0.593
FOXJ3 M09098_2.00	Homo sapiens	WAAMMATAAACAN	NTGTTTATKKTTW	Misc Kulakovskiy et al.(2013) FOXJ3_HUMAN.H11MO.0.A	0.692	0.593
FOXJ3 M04860_2.00	Homo sapiens	RYGTMAACAH	DTGTTKACRY	SELEX Yin et al.(2017) FOXJ3_eDBD_Methyl-HT-SELEX	0.692	0.593
Foxj3 M00160_2.00	Mus musculus	NRTAAACAHN	NDTGTTTAYN	PBM Badis et al.(2009) Foxj3_0982	0.691	0.593
Foxj3 M01981_2.00	Mus musculus	VNHHAYANN	NNTRTDDNB	PBM Weirauch et al.(2014) pTH6591	0.691	0.593
Foxj3 M03055_2.00	Mus musculus	ACGGACACAAT	ATTGTGTCCGT	SELEX Jolma et al.(2013) Foxj3_1	0.691	0.593
Foxj3 M03056_2.00	Mus musculus	GTAAACARTMAACA	TGTTKAYTGTTTAC	SELEX Jolma et al.(2013) Foxj3_2	0.691	0.593
Foxj3 M03057_2.00	Mus musculus	RTAAACAW	WTGTTTAY	SELEX Jolma et al.(2013) Foxj3_3	0.691	0.593
Foxj3 M03058_2.00	Mus musculus	RTAAACAWAAACA	TGTTTWTGTTTAY	SELEX Jolma et al.(2013) Foxj3_4	0.691	0.593
Foxj3 M09102_2.00	Mus musculus	WAAMMATAAACAN	NTGTTTATKKTTW	Misc Kulakovskiy et al.(2013) FOXJ3_MOUSE.H11MO.0.A	0.691	0.593
slp2 M03738_2.00	Drosophila melanogaster	NNTRTTTACAACAHN	NDTGTTGTAAAYANN	SELEX Nitta et al.(2015) slp2_1	0.685	0.674
slp2 M06196_2.00	Drosophila melanogaster	RTAAACAV	BTGTTTAY	B1H Zhu et al.(2011) slp2_SANGER_5_FBgn0004567	0.685	0.674
SPU_007644 M01987_2.00	Strongylocentrotus purpuratus	NNHHAYDNN	NNHRTDDNN	PBM Weirauch et al.(2014) pTH6497	0.679	0.605
FKH1 M01541_2.00	Saccharomyces cerevisiae	NNRTMAAYAN	NTRTTKAYNN	PBM Zhu et al.(2009) Fkh1	0.667	0.465
FKH1 M08555_2.00	Saccharomyces cerevisiae	NNGTAAACADVN	NBHTGTTTACNN	Misc DeBoer et al.(2011) YIL131C_2002	0.667	0.465
Foxj2 M01980_2.00	Mus musculus	RTAAACAN	NTGTTTAY	PBM Weirauch et al.(2014) pTH6638	0.665	0.547
FOXK2 M08118_2.00	Homo sapiens	NNRTAAACANN	NNTGTTTAYNN	ChIP-seq Mathelier et al.(2014) MA1103.1	0.664	0.558
For this family, TFs with SR scores > 0.664* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
EFV53694	Forkhead	39	128	KPPYSYIALITMAILNSPEKKLTLSRICEFIMNRFPYYREKFPAWQNSIRHNLSLNDCFVKVPREPGNPGKGNYWALDPASEDMFDNGSF

Links
Other Forkhead family TFs
Other *Trichinella spiralis* TFs

1758 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action

EFV53694 (Trichinella spiralis) Forkhead

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1758 Related TFs

EFV53694 **(Trichinella spiralis)
Forkhead**