CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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FOMPIDRAFT_1131533
(
Fomitopsis pinicola
)
Forkhead
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00250 (Forkhead)
IPR001766
FOMPIDRAFT_1131533
T187624_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
FOXD2
M03042_2.00
Homo sapiens
NRTMAAYRTTWDYN
NRHWAAYRTTKAYN
SELEX
Jolma et al.(2013)
FOXD2_1
0.668
0.556
FOXD2
M03043_2.00
Homo sapiens
RTAAAYA
TRTTTAY
SELEX
Jolma et al.(2013)
FOXD2_2
0.668
0.556
FOXD2
M04851_2.00
Homo sapiens
HWASAATAAYAWWN
NWWTRTTATTSTWD
SELEX
Yin et al.(2017)
FOXD2_eDBD_HT-SELEX_1
0.668
0.556
FOXD2
M04852_2.00
Homo sapiens
VYWANRTAAAYAH
DTRTTTAYNTWRB
SELEX
Yin et al.(2017)
FOXD2_eDBD_HT-SELEX_2
0.668
0.556
FOXD1
M02681_2.00
Homo sapiens
GTAAACAD
HTGTTTAC
SELEX
Mathelier et al.(2014)
MA0031.1
0.668
0.556
Foxd1
M10570_2.00
Mus musculus
SYWAWGTAAACADHVN
NBDHTGTTTACWTWRS
Transfac
Matys et al.(2006)
V$FREAC4_01
0.668
0.556
FOXD1
M10567_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FREAC4_02
0.668
0.556
FOXD2
M04853_2.00
Homo sapiens
HWACAATAACRWWN
NWWYGTTATTGTWD
SELEX
Yin et al.(2017)
FOXD2_eDBD_Methyl-HT-SELEX_1
0.668
0.556
FOXD2
M04854_2.00
Homo sapiens
RYTRNGTMAACRD
HYGTTKACNYARY
SELEX
Yin et al.(2017)
FOXD2_eDBD_Methyl-HT-SELEX_2
0.668
0.556
For this family, TFs with SR scores >
0.664
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EPS95947
Forkhead
11
93
KPNYPYPTLVKAAILSSPKRRLTLQEIYQALMDRFQWFKDNAKDKAWQNSIRHNLSLNKMFRKMPRDITEPGKGSYWTVDFDA
Links
Other
Forkhead
family TFs
Other
Fomitopsis pinicola
TFs
93 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
fgenesh1_pg.sca_20_chr6_4_0000510
Nectria haematococca
fgenesh1_pg.sca_20_chr6_4_0000510
N
FGRRES_02516
Fusarium graminearum
FGRRES_02516
N
FOXG_06488
Fusarium oxysporum
FOXG_06488
N
FOXG_06773
Fusarium oxysporum
FOXG_06773
N
FOXG_06868
Fusarium oxysporum
FOXG_06868
N
FOXG_07335
Fusarium oxysporum
FOXG_07335
N
FOXG_16142
Fusarium oxysporum
FOXG_16142
N
FOXG_16361
Fusarium oxysporum
FOXG_16361
N
FPSE_08637
Fusarium pseudograminearum
FPSE_08637
N
FVEG_09192
Fusarium verticillioides
FVEG_09192
N
NechaG81884
Fusarium solani
NechaG81884
N