Bo3g168670 (Brassica oleracea)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 Bo3g168670 T191886_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.856 0.944
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.838 0.806
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.838 0.806
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.838 0.806
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.838 0.806
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.837 0.833
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.837 0.778
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.837 0.778
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.833 0.778
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.833 0.778
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.832 0.806
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.830 0.806
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.830 0.806
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.830 0.806
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.819 0.750
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.819 0.750
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.819 0.750
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.819 0.750
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g168670.1 GATA 177 212

Links

Other GATA family TFs
Other Brassica oleracea TFs

610 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R009070 Calypte anna Aan_R009070 I
Alligator_sinensis_CCG012315.1 Alligator sinensis Alligator_sinensis_CCG012315.1 I
Cmyd_10008393 Chelonia mydas Cmyd_10008393 I
ENSAMEG00000005129 Ailuropoda melanoleuca ENSAMEG00000005129 I
ENSAMXG00000009016 Astyanax mexicanus ENSAMXG00000009016 I
ENSCSAG00000008412 Chlorocebus sabaeus ENSCSAG00000008412 I
ENSFALG00000013762 Ficedula albicollis ENSFALG00000013762 I
ENSGMOG00000011626 Gadus morhua ENSGMOG00000011626 I
ENSLACG00000013149 Latimeria chalumnae ENSLACG00000013149 I
ENSLOCG00000008766 Lepisosteus oculatus ENSLOCG00000008766 I
ENSMEUG00000001306 Macropus eugenii ENSMEUG00000001306 I
ENSMPUG00000000024 Mustela putorius furo ENSMPUG00000000024 I
ENSNLEG00000013625 Nomascus leucogenys ENSNLEG00000013625 I
ENSOARG00000001504 Ovis aries ENSOARG00000001504 I
ENSONIG00000002304 Oreochromis niloticus ENSONIG00000002304 I
ENSP00000348069 Macaca fascicularis ENSP00000348069 I
ENSPANG00000023675 Papio anubis ENSPANG00000023675 I
ENSPFOG00000010306 Poecilia formosa ENSPFOG00000010306 I
ENSPMAG00000001400 Petromyzon marinus ENSPMAG00000001400 I
ENSPPYG00000008037 Pongo abelii ENSPPYG00000008037 I
ENSPSIG00000005996 Pelodiscus sinensis ENSPSIG00000005996 I
ENSSHAG00000018607 Sarcophilus harrisii ENSSHAG00000018607 I
ENSSSCG00000023124 Sus scrofa ENSSSCG00000023124 I
ENSSTOG00000014939 Ictidomys tridecemlineatus ENSSTOG00000014939 I
ENSXMAG00000014774 Xiphophorus maculatus ENSXMAG00000014774 I
GB54953 Apis mellifera GB54953 I
Gfo_R006283 Geospiza fortis Gfo_R006283 I
HLH106 Drosophila melanogaster FBgn0261283 D
HMEL008680 Heliconius melpomene HMEL008680 I
Hsal_02671--XP_396866.3_APIME Harpegnathos saltator Hsal_02671--XP_396866.3_APIME I
KGM_21476 Danaus plexippus KGM_21476 I
L798_14382 Zootermopsis nevadensis L798_14382 I
LCUP004742 Lucilia cuprina LCUP004742 I
LLOJ009997 Lutzomyia longipalpis LLOJ009997 N
LotgiG224211 Lottia gigantea LotgiG224211 I
MDOA000648 Musca domestica MDOA000648 I
Myotis_brandtii_SREBF1_10023215 Myotis brandtii Myotis_brandtii_SREBF1_10023215 I
NV10553 Nasonia vitripennis NV10553 I
Ocbimv22024635m.g Octopus bimaculoides Ocbimv22024635m.g I
Ogr11708 Ophisaurus gracilis Ogr11708 I
Pvit_05020 Pogona vitticeps Pvit_05020 I
Sakowv30028178m.g Saccoglossus kowalevskii Sakowv30028178m.g I
SINV16629 Solenopsis invicta SINV16629 I
SMAR011485 Strigamia maritima SMAR011485 I
SREBF1 Canis familiaris ENSCAFG00000018436 I
SREBF1 Callithrix jacchus ENSCJAG00000008953 I
SREBF1 Cavia porcellus ENSCPOG00000002439 I
SREBF1 Bos taurus ENSBTAG00000007884 I
srebf1 Xenopus tropicalis XB-GENE-987572 I
SREBF1 Monodelphis domestica ENSMODG00000014074 I
SREBF1 Taeniopygia guttata ENSTGUG00000007313 I
SREBF1 Procavia capensis ENSPCAG00000014903 I
SREBF1 Homo sapiens ENSG00000072310 D
SREBF1 Felis catus ENSFCAG00000001983 I
SREBF1 Echinops telfairi ENSETEG00000004179 I
srebf1 Gasterosteus aculeatus ENSGACG00000012064 I
srebf1 Oryzias latipes ENSORLG00000009437 I
SREBF1 Equus caballus ENSECAG00000019802 I
SREBF1 Pteropus vampyrus ENSPVAG00000005765 I
Srebf1 Rattus norvegicus ENSRNOG00000003463 I
Srebf1 Dipodomys ordii ENSDORG00000012333 I
srebf1 Danio rerio ENSDARG00000067607 I
srebf1 Tetraodon nigroviridis ENSTNIG00000011957 I
srebf1 Takifugu rubripes ENSTRUG00000008197 I
SREBF1 Ochotona princeps ENSOPRG00000015069 I
SREBF1 Gallus gallus ENSGALG00000027188 I
SREBF1 Otolemur garnettii ENSOGAG00000002910 I
SREBF1 Gorilla gorilla ENSGGOG00000002713 I
SREBF1 Ornithorhynchus anatinus ENSOANG00000012278 I
SREBF1 Loxodonta africana ENSLAFG00000021644 I
Srebf1 Mus musculus ENSMUSG00000020538 D
SREBF1 Microcebus murinus ENSMICG00000012535 I
SREBF1 Macaca mulatta ENSMMUG00000023375 I
SREBP Drosophila erecta FBgn0108291 I
SREBP Drosophila pseudoobscura FBgn0081122 I
SREBP Drosophila yakuba FBgn0236960 I
SREBP Drosophila willistoni FBgn0219495 I
SREBP Drosophila virilis FBgn0198580 I
SREBP Drosophila simulans FBgn0186498 I
SREBP Drosophila sechellia FBgn0174544 I
SREBP Drosophila persimilis FBgn0153336 I
SREBP Drosophila grimshawi FBgn0122129 I
SREBP Drosophila ananassae FBgn0100584 I
tetur08g03870 Tetranychus urticae tetur08g03870 I
XP_002944649 Xenopus tropicalis XP_002944649 I
YQE_07365 Dendroctonus ponderosae YQE_07365 I