Bo4g071630 (Brassica oleracea)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 Bo4g071630 T191889_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.856 0.944
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.856 0.944
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.837 0.833
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.837 0.778
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.832 0.778
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.823 0.806
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.823 0.806
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.823 0.778
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.823 0.778
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.823 0.778
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.823 0.778
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.819 0.778
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.819 0.778
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.819 0.750
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.819 0.750
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.819 0.750
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.819 0.750
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.819 0.750
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo4g071630.1 GATA 224 259

Links

Other GATA family TFs
Other Brassica oleracea TFs

603 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA002833 Oryza indica BGIOSGA002833 N
BRADI2G03830 Brachypodium distachyon BRADI2G03830 I
BRADI2G34600 Brachypodium distachyon BRADI2G34600 N
cassava18812.valid.m1 Manihot esculenta cassava18812.valid.m1 I
evm.TU.supercontig_21.7 Carica papaya evm.TU.supercontig_21.7 N
F775_00759 Aegilops tauschii F775_00759 N
F775_01873 Aegilops tauschii F775_01873 N
Gorai.011G034000 Gossypium raimondii Gorai.011G034000 I
GRMZM2G088443 Zea mays GRMZM2G088443 I
GRMZM2G369629 Zea mays GRMZM2G369629 N
GSMUA_Achr5G29390_001 Musa acuminata GSMUA_Achr5G29390_001 N
LPERR01G03590 Leersia perrieri LPERR01G03590 I
LPERR05G03980 Leersia perrieri LPERR05G03980 N
Lus10013917.g Linum usitatissimum Lus10013917.g I
MLOC_69121 Hordeum vulgare MLOC_69121 N
OB01G13800 Oryza brachyantha OB01G13800 N
OB05G14140 Oryza brachyantha OB05G14140 N
OBART01G03950 Oryza barthii OBART01G03950 N
OBART05G04450 Oryza barthii OBART05G04450 N
OGLUM01G04250 Oryza glumaepatula OGLUM01G04250 N
OGLUM05G04370 Oryza glumaepatula OGLUM05G04370 N
OLONG_015419 Oryza longistaminata OLONG_015419 N
OMERI01G03850 Oryza meridionalis OMERI01G03850 N
OMERI05G04410 Oryza meridionalis OMERI05G04410 N
ONIVA01G04390 Oryza nivara ONIVA01G04390 N
ONIVA05G04820 Oryza nivara ONIVA05G04820 N
OPUNC01G03610 Oryza punctata OPUNC01G03610 N
OPUNC05G04080 Oryza punctata OPUNC05G04080 N
ORGLA01G0034700 Oryza glaberrima ORGLA01G0034700 N
ORGLA05G0041400 Oryza glaberrima ORGLA05G0041400 N
ORUFI01G04050 Oryza rufipogon ORUFI01G04050 N
ORUFI05G04670 Oryza rufipogon ORUFI05G04670 N
OS05G0163900 Oryza sativa OS05G0163900 N
Pavir.Ca01107 Panicum virgatum Pavir.Ca01107 I
Pavir.Ea00439 Panicum virgatum Pavir.Ea00439 I
Pavir.J32610 Panicum virgatum Pavir.J32610 N
PDK_20s1551661g004 Phoenix dactylifera PDK_20s1551661g004 N
Sb03g005250 Sorghum bicolor Sb03g005250 N
Sb09g004820 Sorghum bicolor Sb09g004820 N
Si002655m.g Setaria italica Si002655m.g I
Si012213m.g Setaria italica Si012213m.g N
TRAES3BF130100030CFD_g Triticum aestivum TRAES3BF130100030CFD_g N
Traes_1AS_96F0745A2 Triticum aestivum Traes_1AS_96F0745A2 N
Traes_1BS_1F372BED3 Triticum aestivum Traes_1BS_1F372BED3 N
Traes_1DS_CD79239C8 Triticum aestivum Traes_1DS_CD79239C8 N
Traes_3B_2DF1A6E5B Triticum aestivum Traes_3B_2DF1A6E5B N
TRIUR3_07421 Triticum urartu TRIUR3_07421 N
TRIUR3_12818 Triticum urartu TRIUR3_12818 N
TRIUR3_21807 Triticum urartu TRIUR3_21807 N