Pm008287 (Prunus mume)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Pm008287 T195955_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA16
M06897_2.00 		Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT		 Dap-seq
OMalley et al.(2016)
GATA16_col_a 		0.842 0.917
GATA15
M01997_2.00 		Arabidopsis thaliana
NNHGATCNN
NNGATCDNN		 PBM
Weirauch et al.(2014)
pTH7662 		0.822 0.917
GATA15
M06886_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATS
SATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
GATA15_col_b 		0.822 0.917
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm008287 GATA 32 67

Links

Other GATA family TFs
Other Prunus mume TFs

143 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
anac095 Arabidopsis thaliana AT5G41090 N 0.000
AT3G56520 Arabidopsis thaliana AT3G56520 N 0.000
Bo6g064960 Brassica oleracea Bo6g064960 N 0.000
Bo6g072200 Brassica oleracea Bo6g072200 N 0.000
Bo7g030700 Brassica oleracea Bo7g030700 N 0.000
Bo8g090950 Brassica oleracea Bo8g090950 N 0.000
Bostr.20505s0102 Boechera stricta Bostr.20505s0102 N 0.000
Bostr.7200s0128 Boechera stricta Bostr.7200s0128 N 0.000
Bra003244 Brassica rapa Bra003244 N 0.000
Bra007254 Brassica rapa Bra007254 N 0.000
Bra028486 Brassica rapa Bra028486 N 0.000
Cagra.1914s0015 Capsella grandiflora Cagra.1914s0015 N 0.000
Carubv10005574m.g Capsella rubella Carubv10005574m.g N 0.000
fgenesh1_pm.C_scaffold_5001708 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001708 N 0.000
scaffold_500654.1 Arabidopsis lyrata scaffold_500654.1 N 0.000
Thhalv10006451m.g Eutrema salsugineum Thhalv10006451m.g N 0.000
Thhalv10027901m.g Eutrema salsugineum Thhalv10027901m.g N 0.000