cassava38225.valid.m1 (Manihot esculenta)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 cassava38225.valid.m1 T196032_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.867 0.972
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.848 0.917
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.847 0.833
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.847 0.833
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.847 0.833
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.847 0.806
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.847 0.806
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.843 0.833
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.843 0.833
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.843 0.833
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.843 0.833
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.832 0.806
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.832 0.806
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.823 0.806
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.823 0.806
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.819 0.778
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.819 0.750
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.819 0.750
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava38225.valid.m1 GATA 257 292

Links

Other GATA family TFs
Other Manihot esculenta TFs

612 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BOTBODRAFT_178020 Botryobasidium botryosum BOTBODRAFT_178020 N
CC1G_01056 Coprinopsis cinerea CC1G_01056 N
CERSUDRAFT_113294 Ceriporiopsis subvermispora CERSUDRAFT_113294 N
DACRYDRAFT_68629 Dacryopinax sp DACRYDRAFT_68629 N
estExt_Genewise1Plus.C_20226 Heterobasidion annosum estExt_Genewise1Plus.C_20226 N
FIBRA_01643 Fibroporia radiculosa FIBRA_01643 N
FOMPIDRAFT_1038716 Fomitopsis pinicola FOMPIDRAFT_1038716 N
GLOTRDRAFT_71665 Gloeophyllum trabeum GLOTRDRAFT_71665 N
GYMLUDRAFT_41756 Gymnopus luxurians GYMLUDRAFT_41756 N
HETIRDRAFT_471598 Heterobasidion irregulare HETIRDRAFT_471598 N
JAAARDRAFT_173841 Jaapia argillacea JAAARDRAFT_173841 N
K443DRAFT_637386 Laccaria amethystina K443DRAFT_637386 N
LACBIDRAFT_307391 Laccaria bicolor LACBIDRAFT_307391 N
M378DRAFT_167115 Amanita muscaria M378DRAFT_167115 N
M404DRAFT_122870 Pisolithus tinctorius M404DRAFT_122870 N
M407DRAFT_29912 Tulasnella calospora M407DRAFT_29912 N
M408DRAFT_325955 Serendipita vermifera M408DRAFT_325955 N
M413DRAFT_15021 Hebeloma cylindrosporum M413DRAFT_15021 N
M422DRAFT_168669 Sphaerobolus stellatus M422DRAFT_168669 N
M422DRAFT_62342 Sphaerobolus stellatus M422DRAFT_62342 N
Moror_2743 Moniliophthora roreri Moror_2743 N
MVLG_04149 Microbotryum violaceum MVLG_04149 N
PaG_00967 Pseudozyma aphidis PaG_00967 N
PAN0_066c6560 Pseudozyma antarctica PAN0_066c6560 N
PAXRUDRAFT_130614 Paxillus rubicundulus PAXRUDRAFT_130614 N
PHACADRAFT_255745 Phanerochaete carnosa PHACADRAFT_255745 N
PHLGIDRAFT_29407 Phlebiopsis gigantea PHLGIDRAFT_29407 N
PHSY_007470 Pseudozyma hubeiensis PHSY_007470 N
PILCRDRAFT_816234 Piloderma croceum PILCRDRAFT_816234 N
PISMIDRAFT_86154 Pisolithus microcarpus PISMIDRAFT_86154 N
PLEOSDRAFT_1032392 Pleurotus ostreatus PLEOSDRAFT_1032392 N
PSEUBRA_SCAF13g01883 Pseudozyma brasiliensis PSEUBRA_SCAF13g01883 N
SCHCODRAFT_255852 Schizophyllum commune SCHCODRAFT_255852 N
SCLCIDRAFT_120465 Scleroderma citrinum SCLCIDRAFT_120465 N
SERLA73DRAFT_59903 Serpula lacrymans SERLA73DRAFT_59903 N
sr15125 Sporisorium reilianum sr15125 N
UHOR_06361 Ustilago hordei UHOR_06361 N
UM04235 Ustilago maydis UM04235 N
V565_046060 Rhizoctonia solani V565_046060 N