Bostr.29827s0236 (Boechera stricta)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Bostr.29827s0236 T196403_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.867 1.000
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.867 1.000
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.867 1.000
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.862 0.972
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.847 0.889
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.847 0.889
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.843 0.833
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.843 0.833
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.838 0.806
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.832 0.833
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.832 0.833
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.832 0.833
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.832 0.778
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.832 0.778
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.823 0.806
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.823 0.806
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.823 0.806
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.819 0.750
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.29827s0236.1.p GATA 221 256

Links

Other GATA family TFs
Other Boechera stricta TFs

614 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL002079 Aedes aegypti AAEL002079 N
AALB002019 Anopheles albimanus AALB002019 N
AARA005043 Anopheles arabiensis AARA005043 N
ACHR001889 Anopheles christyi ACHR001889 N
ACOM030546 Anopheles coluzzii ACOM030546 N
ACUA002940 Anopheles culicifacies ACUA002940 N
ADAC008437 Anopheles darlingi ADAC008437 N
ADIR011245 Anopheles dirus ADIR011245 N
AEPI008198 Anopheles epiroticus AEPI008198 N
AFAF002703 Anopheles farauti AFAF002703 N
AFUN015812 Anopheles funestus AFUN015812 N
AFUN015813 Anopheles funestus AFUN015813 N
AGAP008084 Anopheles gambiae AGAP008084 N
AMAM002157 Anopheles maculatus AMAM002157 N
AMEC008629 Anopheles melas AMEC008629 N
AMEM005132 Anopheles merus AMEM005132 N
AMIN006189 Anopheles minimus AMIN006189 N
AQUA001070 Anopheles quadriannulatus AQUA001070 N
ASIS015471 Anopheles sinensis ASIS015471 N
ASTEI01836 Anopheles stephensi ASTEI01836 N
CPIJ001883 Culex quinquefasciatus CPIJ001883 N
CpipJ_CPIJ001883 Culex pipiens CpipJ_CPIJ001883 N
GA20441 Drosophila pseudoobscura FBgn0080436 N
GD23502 Drosophila simulans FBgn0194881 N
GE18732 Drosophila yakuba FBgn0236124 N
GF14757 Drosophila ananassae FBgn0091784 N
GG10512 Drosophila erecta FBgn0102820 N
GI17918 Drosophila mojavensis FBgn0140659 N
GJ17690 Drosophila virilis FBgn0204859 N
GK15318 Drosophila willistoni FBgn0217323 N
GL24756 Drosophila persimilis FBgn0162344 N
GM16720 Drosophila sechellia FBgn0171633 N
LCUP011585 Lucilia cuprina LCUP011585 N
MDOA011496 Musca domestica MDOA011496 N
PPAI007775 Phlebotomus papatasi PPAI007775 N
Trf Drosophila melanogaster FBgn0010287 N