Cagra.7149s0001 (Capsella grandiflora)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Cagra.7149s0001 T196443_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA20
M06884_2.00 		Arabidopsis thaliana
GATCBGAT
ATCVGATC		 Dap-seq
OMalley et al.(2016)
GATA20_col_a 		0.593 1.000
GATA20
M06885_2.00 		Arabidopsis thaliana
HNGATCNGATBND
HNVATCNGATCND		 Dap-seq
OMalley et al.(2016)
GATA20_colamp_a 		0.593 1.000
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.7149s0001.1.p GATA 95 114

Links

Other GATA family TFs
Other Capsella grandiflora TFs

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMAG_07863 Allomyces macrogynus AMAG_07863 N 0.806
Bostr.18351s0307 Boechera stricta Bostr.18351s0307 I 0.593
Bra037221 Brassica rapa Bra037221 I 0.593
Bra039614 Brassica rapa Bra039614 I 0.593
Carubv10014541m.g Capsella rubella Carubv10014541m.g I 0.593
GATA20 Arabidopsis lyrata Al_scaffold_0003_3815 I 0.593
GATA20 Arabidopsis thaliana AT2G18380 D 0.593
LjSGA_131100.1 Lotus japonicus LjSGA_131100.1 N 0.811
PAXRUDRAFT_18037 Paxillus rubicundulus PAXRUDRAFT_18037 N 0.806
Thhalv10022854m.g Eutrema salsugineum Thhalv10022854m.g I 0.593
TRIUR3_13697 Triticum urartu TRIUR3_13697 N 0.811