Carubv10007612m.g (Capsella rubella)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Carubv10007612m.g T196453_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA19
M06893_2.00 		Arabidopsis thaliana
BNGATCBGATY
RATCVGATCNV		 Dap-seq
OMalley et al.(2016)
GATA19_col_a 		0.867 1.000
GATA19
M06894_2.00 		Arabidopsis thaliana
HNGATCBGATY
RATCVGATCND		 Dap-seq
OMalley et al.(2016)
GATA19_colamp_a 		0.867 1.000
GATA20
M06884_2.00 		Arabidopsis thaliana
GATCBGAT
ATCVGATC		 Dap-seq
OMalley et al.(2016)
GATA20_col_a 		0.825 0.944
GATA20
M06885_2.00 		Arabidopsis thaliana
HNGATCNGATBND
HNVATCNGATCND		 Dap-seq
OMalley et al.(2016)
GATA20_colamp_a 		0.825 0.944
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10007612m GATA 77 112

Links

Other GATA family TFs
Other Capsella rubella TFs

132 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R007727 Calypte anna Aan_R007727 I
Afo_R009492 Aptenodytes forsteri Afo_R009492 I
Alligator_sinensis_CCG007004.1 Alligator sinensis Alligator_sinensis_CCG007004.1 I
ATOH7 Otolemur garnettii ENSOGAG00000000980 I
ATOH7 Meleagris gallopavo ENSMGAG00000015321 I
ATOH7 Macaca mulatta ENSMMUG00000015131 I
ATOH7 Monodelphis domestica ENSMODG00000017280 I
Atoh7 Mus musculus ENSMUSG00000036816 I
ATOH7 Ornithorhynchus anatinus ENSOANG00000001952 I
ATOH7 Vicugna pacos ENSVPAG00000011811 I
ATOH7 Sus scrofa ENSSSCG00000021995 I
ATOH7 Tursiops truncatus ENSTTRG00000013318 I
atoh7 Oryzias latipes ENSORLG00000013722 I
atoh7 Takifugu rubripes ENSTRUG00000017954 I
atoh7 Tetraodon nigroviridis ENSTNIG00000013093 I
ATOH7 Taeniopygia guttata ENSTGUG00000003584 I
ATOH7 Pan troglodytes ENSPTRG00000002551 I
ATOH7 Pteropus vampyrus ENSPVAG00000008035 I
Atoh7 Rattus norvegicus ENSRNOG00000000384 I
ATOH7 Loxodonta africana ENSLAFG00000012951 I
atoh7 Xenopus tropicalis XB-GENE-989022 I
ATOH7 Canis familiaris ENSCAFG00000013555 I
ATOH7 Choloepus hoffmanni ENSCHOG00000013736 I
ATOH7 Callithrix jacchus ENSCJAG00000022261 I
atoh7 Danio rerio ENSDARG00000069552 I
ATOH7 Dasypus novemcinctus ENSDNOG00000048556 I
ATOH7 Echinops telfairi ENSETEG00000014608 I
ATOH7 Anolis carolinensis ENSACAG00000010441 I
ATOH7 Felis catus ENSFCAG00000003425 I
ATOH7 Homo sapiens ENSG00000179774 D
atoh7 Gasterosteus aculeatus ENSGACG00000003390 I
ATOH7 Gallus gallus ENSGALG00000003931 I
ATOH7 Gorilla gorilla ENSGGOG00000016464 I
atoh7.L Xenopus laevis XB-GENE-989023 I
atoh7.S Xenopus laevis XB-GENE-6252646 I
Brh_R011172 Buceros rhinoceros Brh_R011172 I
Cmyd_10012128 Chelonia mydas Cmyd_10012128 I
ENSAMEG00000019067 Ailuropoda melanoleuca ENSAMEG00000019067 I
ENSAMXG00000025967 Astyanax mexicanus ENSAMXG00000025967 I
ENSAPLG00000000737 Anas platyrhynchos ENSAPLG00000000737 I
ENSCSAG00000018432 Chlorocebus sabaeus ENSCSAG00000018432 I
ENSFALG00000014082 Ficedula albicollis ENSFALG00000014082 I
ENSLACG00000017485 Latimeria chalumnae ENSLACG00000017485 I
ENSLOCG00000018251 Lepisosteus oculatus ENSLOCG00000018251 I
ENSMPUG00000018542 Mustela putorius furo ENSMPUG00000018542 I
ENSNLEG00000018622 Nomascus leucogenys ENSNLEG00000018622 I
ENSOARG00000004935 Ovis aries ENSOARG00000004935 I
ENSONIG00000010284 Oreochromis niloticus ENSONIG00000010284 I
ENSP00000362777 Macaca fascicularis ENSP00000362777 I
ENSP00000362777-D1 Bos grunniens ENSP00000362777-D1 I
ENSPANG00000008840 Papio anubis ENSPANG00000008840 I
ENSPFOG00000020278 Poecilia formosa ENSPFOG00000020278 I
ENSPSIG00000000814 Pelodiscus sinensis ENSPSIG00000000814 I
ENSSTOG00000023613 Ictidomys tridecemlineatus ENSSTOG00000023613 I
ENSXMAG00000019829 Xiphophorus maculatus ENSXMAG00000019829 I
Gfo_R013988 Geospiza fortis Gfo_R013988 I
Ogr07245 Ophisaurus gracilis Ogr07245 I
Pvit_00553 Pogona vitticeps Pvit_00553 I
Tal_R012797 Tyto alba Tal_R012797 I