CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Carubv10014541m.g *(Capsella rubella)* GATA
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00320 (GATA)	IPR000679	Carubv10014541m.g	T196457_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
GATA20 M06884_2.00	Arabidopsis thaliana	GATCBGAT	ATCVGATC	Dap-seq OMalley et al.(2016) GATA20_col_a	0.867	1.000
GATA20 M06885_2.00	Arabidopsis thaliana	HNGATCNGATBND	HNVATCNGATCND	Dap-seq OMalley et al.(2016) GATA20_colamp_a	0.867	1.000
GATA19 M06893_2.00	Arabidopsis thaliana	BNGATCBGATY	RATCVGATCNV	Dap-seq OMalley et al.(2016) GATA19_col_a	0.825	0.944
GATA19 M06894_2.00	Arabidopsis thaliana	HNGATCBGATY	RATCVGATCND	Dap-seq OMalley et al.(2016) GATA19_colamp_a	0.825	0.944
For this family, TFs with SR scores > 0.802* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Carubv10014541m	GATA	117	152	CASCDTTSTPLWRNGPKGPKSLCNACGIRFKKEERR

Links
Other GATA family TFs
Other *Capsella rubella* TFs

130 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
A1O9_05522	Exophiala aquamarina	A1O9_05522	N	0.000
FFUJ_03804	Fusarium fujikuroi	FFUJ_03804	N	0.000
FOXG_05667	Fusarium oxysporum	FOXG_05667	N	0.000
HMPREF1624_04913	Sporothrix schenckii	HMPREF1624_04913	N	0.000
OIDMADRAFT_170284	Oidiodendron maius	OIDMADRAFT_170284	N	0.000
PMAA_026010	Talaromyces marneffei	PMAA_026010	N	0.000
PMAA_026010	Penicillium marneffei	PMAA_026010	N	0.000
S40285_03321	Stachybotrys chlorohalonata	S40285_03321	N	0.000
SPBR_04958	Sporothrix brasiliensis	SPBR_04958	N	0.000
UV8b_944	Ustilaginoidea virens	UV8b_944	N	0.000
Z519_10035	Cladophialophora bantiana	Z519_10035	N	0.000