Carubv10014665m.g (Capsella rubella)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Carubv10014665m.g T196458_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA16
M06897_2.00 		Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT		 Dap-seq
OMalley et al.(2016)
GATA16_col_a 		0.823 0.778
GATA15
M01997_2.00 		Arabidopsis thaliana
NNHGATCNN
NNGATCDNN		 PBM
Weirauch et al.(2014)
pTH7662 		0.803 0.778
GATA15
M06886_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATS
SATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
GATA15_col_b 		0.803 0.778
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10014665m GATA 56 91

Links

Other GATA family TFs
Other Capsella rubella TFs

112 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSCSAG00000004151 Chlorocebus sabaeus ENSCSAG00000004151 N
ENSDORG00000001378 Dipodomys ordii ENSDORG00000001378 N
ENSMMUG00000001933 Macaca mulatta ENSMMUG00000001933 N
ENSMMUP00000002578 Macaca fascicularis ENSMMUP00000002578 N
ENSNLEG00000016977 Nomascus leucogenys ENSNLEG00000016977 N
ENSPANG00000019660 Papio anubis ENSPANG00000019660 N
ENSPPYG00000009918 Pongo abelii ENSPPYG00000009918 N
ENSSTOG00000005694 Ictidomys tridecemlineatus ENSSTOG00000005694 N
ENSTSYG00000010884 Tarsius syrichta ENSTSYG00000010884 N
Myotis_brandtii_ZFP30_10005467 Myotis brandtii Myotis_brandtii_ZFP30_10005467 N
Zfp30 Mus musculus ENSMUSG00000047473 N
ZFP30 Myotis lucifugus ENSMLUG00000012181 N
ZFP30 Oryctolagus cuniculus ENSOCUG00000010157 N
ZFP30 Otolemur garnettii ENSOGAG00000013495 N
ZFP30 Loxodonta africana ENSLAFG00000004782 N
ZFP30 Gorilla gorilla ENSGGOG00000016654 N
ZFP30 Pan troglodytes ENSPTRG00000010914 N
ZFP30 Pteropus vampyrus ENSPVAG00000006214 N
Zfp30 Rattus norvegicus ENSRNOG00000055519 N
ZFP30 Sorex araneus ENSSARG00000000413 N
ZFP30 Sus scrofa ENSSSCG00000029408 N
ZFP30 Homo sapiens ENSG00000120784 N
ZFP30 Equus caballus ENSECAG00000017215 N
ZFP30 Vicugna pacos ENSVPAG00000010720 N
ZFP30 Dasypus novemcinctus ENSDNOG00000032824 N
ZFP30 Cavia porcellus ENSCPOG00000007951 N