Ciclev10019614m.g (Citrus clementina)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Ciclev10019614m.g T196488_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA26
M02001_2.00 		Arabidopsis thaliana
NNKATBNNNN
NNNNVATMNN		 PBM
Weirauch et al.(2014)
pTH7490 		0.867 0.972
GATA27
M02005_2.00 		Arabidopsis thaliana
NNGATBNNN
NNNVATCNN		 PBM
Weirauch et al.(2014)
pTH7492 		0.867 0.972
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10019607m GATA 7 42
Ciclev10019614m GATA 7 42

Links

Other GATA family TFs
Other Citrus clementina TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA019943 Oryza indica BGIOSGA019943 N
MLOC_70503 Hordeum vulgare MLOC_70503 N
OB0245G10010 Oryza brachyantha OB0245G10010 N
OGLUM02G07340 Oryza glumaepatula OGLUM02G07340 N
OGLUM05G19360 Oryza glumaepatula OGLUM05G19360 N
OMERI05G15970 Oryza meridionalis OMERI05G15970 N
ONIVA02G08940 Oryza nivara ONIVA02G08940 N
ONIVA05G19190 Oryza nivara ONIVA05G19190 N
OPUNC02G06490 Oryza punctata OPUNC02G06490 N
OPUNC05G16080 Oryza punctata OPUNC05G16080 N
PGSC0003DMG400030271 Solanum tuberosum PGSC0003DMG400030271 N
PK07396.1 Cannabis sativa PK07396.1 N
Solyc06g074360.2 Solanum lycopersicum Solyc06g074360.2 N
Traes_5AL_78701B16C Triticum aestivum Traes_5AL_78701B16C N
Traes_7AS_9671D35EF Triticum aestivum Traes_7AS_9671D35EF N
TRIUR3_33088 Triticum urartu TRIUR3_33088 N