gene05175-v1.0-hybrid (Fragaria vesca)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 gene05175-v1.0-hybrid T196563_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA16
M06897_2.00 		Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT		 Dap-seq
OMalley et al.(2016)
GATA16_col_a 		0.842 0.889
GATA15
M01997_2.00 		Arabidopsis thaliana
NNHGATCNN
NNGATCDNN		 PBM
Weirauch et al.(2014)
pTH7662 		0.822 0.889
GATA15
M06886_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATS
SATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
GATA15_col_b 		0.822 0.889
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna05175.1-v1.0-hybrid GATA 37 72

Links

Other GATA family TFs
Other Fragaria vesca TFs

143 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ebd1 Drosophila melanogaster FBgn0035153 N 0.000
GA17411 Drosophila pseudoobscura FBgn0077424 N 0.000
GD13519 Drosophila simulans FBgn0185230 N 0.000
GE21007 Drosophila yakuba FBgn0238289 N 0.000
GF24076 Drosophila ananassae FBgn0101070 N 0.000
GH16041 Drosophila grimshawi FBgn0123512 N 0.000
GJ13241 Drosophila virilis FBgn0200467 N 0.000
GK16684 Drosophila willistoni FBgn0218686 N 0.000
GL20839 Drosophila persimilis FBgn0158434 N 0.000
GM14262 Drosophila sechellia FBgn0169188 N 0.000
LCUP009599 Lucilia cuprina LCUP009599 N 0.000
MDOA004363 Musca domestica MDOA004363 N 0.000