Pavir.Eb02678 (Panicum virgatum)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Pavir.Eb02678 T196740_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA19
M06893_2.00 		Arabidopsis thaliana
BNGATCBGATY
RATCVGATCNV		 Dap-seq
OMalley et al.(2016)
GATA19_col_a 		0.867 0.972
GATA19
M06894_2.00 		Arabidopsis thaliana
HNGATCBGATY
RATCVGATCND		 Dap-seq
OMalley et al.(2016)
GATA19_colamp_a 		0.867 0.972
GATA20
M06884_2.00 		Arabidopsis thaliana
GATCBGAT
ATCVGATC		 Dap-seq
OMalley et al.(2016)
GATA20_col_a 		0.825 0.917
GATA20
M06885_2.00 		Arabidopsis thaliana
HNGATCNGATBND
HNVATCNGATCND		 Dap-seq
OMalley et al.(2016)
GATA20_colamp_a 		0.825 0.917
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Eb02678.1.p GATA 118 153

Links

Other GATA family TFs
Other Panicum virgatum TFs

132 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O9_03240 Exophiala aquamarina A1O9_03240 I 0.000
ACLA_015940 Aspergillus clavatus CADACLAG00001153 I 0.000
AFUA_5G12930 Aspergillus fumigatus CADAFUAG00006653 I 0.000
HMPREF1624_01132 Sporothrix schenckii HMPREF1624_01132 I 0.000
NFIA_074150 Neosartorya fischeri CADNFIAG00007185 I 0.000
PGUG_05832 Candida guilliermondii PGUG_05832 I 0.000
PGUG_05832 Meyerozyma guilliermondii PGUG_05832 I 0.000
SPBR_08138 Sporothrix brasiliensis SPBR_08138 N 0.000
Z517_07459 Fonsecaea pedrosoi Z517_07459 N 0.000
Z518_09601 Rhinocladiella mackenziei Z518_09601 N 0.000