Pavir.Eb04066 (Panicum virgatum)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Pavir.Eb04066 T196742_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA16
M06897_2.00 		Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT		 Dap-seq
OMalley et al.(2016)
GATA16_col_a 		0.811 0.833
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Eb04066.1.p GATA 36 71

Links

Other GATA family TFs
Other Panicum virgatum TFs

107 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_09292 Capronia coronata A1O1_09292 N 0.000
A1O3_04668 Capronia epimyces A1O3_04668 N 0.000
A1O5_10885 Cladophialophora psammophila A1O5_10885 N 0.000
A1O9_10446 Exophiala aquamarina A1O9_10446 N 0.000
G647_08050 Cladophialophora carrionii G647_08050 N 0.000
HMPREF1120_01469 Exophiala dermatitidis HMPREF1120_01469 N 0.000
PV04_09680 Capronia semiimmersa PV04_09680 N 0.000
PV05_00085 Exophiala xenobiotica PV05_00085 N 0.000
PV06_10613 Exophiala oligosperma PV06_10613 N 0.000
PV07_00036 Cladophialophora immunda PV07_00036 N 0.000
PV08_02169 Exophiala spinifera PV08_02169 N 0.000
PV10_04737 Exophiala mesophila PV10_04737 N 0.000
PV11_03405 Exophiala sideris PV11_03405 N 0.000
Z517_01937 Fonsecaea pedrosoi Z517_01937 N 0.000
Z518_03437 Rhinocladiella mackenziei Z518_03437 N 0.000
Z519_11424 Cladophialophora bantiana Z519_11424 N 0.000