CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Pavir.J18346 *(Panicum virgatum)* GATA
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00320 (GATA)	IPR000679	Pavir.J18346	T196767_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
GATA19 M06893_2.00	Arabidopsis thaliana	BNGATCBGATY	RATCVGATCNV	Dap-seq OMalley et al.(2016) GATA19_col_a	0.862	0.944
GATA19 M06894_2.00	Arabidopsis thaliana	HNGATCBGATY	RATCVGATCND	Dap-seq OMalley et al.(2016) GATA19_colamp_a	0.862	0.944
GATA20 M06884_2.00	Arabidopsis thaliana	GATCBGAT	ATCVGATC	Dap-seq OMalley et al.(2016) GATA20_col_a	0.820	0.889
GATA20 M06885_2.00	Arabidopsis thaliana	HNGATCNGATBND	HNVATCNGATCND	Dap-seq OMalley et al.(2016) GATA20_colamp_a	0.820	0.889
For this family, TFs with SR scores > 0.802* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Pavir.J18346.1.p	GATA	150	185	CANCGTSSTPLWRNGPRGPKSLCNACGIRFKKEERR

Links
Other GATA family TFs
Other *Panicum virgatum* TFs