Thhalv10021708m.g (Eutrema salsugineum)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Thhalv10021708m.g T196835_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA15
M01997_2.00 		Arabidopsis thaliana
NNHGATCNN
NNGATCDNN		 PBM
Weirauch et al.(2014)
pTH7662 		0.867 1.000
GATA15
M06886_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATS
SATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
GATA15_col_b 		0.867 1.000
GATA16
M06897_2.00 		Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT		 Dap-seq
OMalley et al.(2016)
GATA16_col_a 		0.825 0.943
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10021708m GATA 41 75
Thhalv10021738m GATA 30 64

Links

Other GATA family TFs
Other Eutrema salsugineum TFs

110 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CaO19.11621 Candida albicans CaO19.11621 N
CaO19.4145 Candida albicans CaO19.4145 N
CD36_50850 Candida dubliniensis CD36_50850 N
CTRG_02684 Candida tropicalis CTRG_02684 N
DEHA2E13398g Debaryomyces hansenii DEHA2E13398g N
e_gww1.3.1.48.1 Pichia stipitis e_gww1.3.1.48.1 N
fgenesh1_pg.sca_50_chr16_1_0000057 Nectria haematococca fgenesh1_pg.sca_50_chr16_1_0000057 N
NechaG88789 Fusarium solani NechaG88789 N
PICST_58009 Scheffersomyces stipitis PICST_58009 N