PK18657.1 (Cannabis sativa)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 PK18657.1 T196916_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.856 0.972
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.856 0.972
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.856 0.972
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.847 0.861
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.847 0.833
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.847 0.833
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.837 0.861
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.837 0.861
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.837 0.861
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.832 0.833
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.832 0.833
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.832 0.833
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.832 0.806
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.819 0.778
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.819 0.778
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.819 0.778
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.819 0.778
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.819 0.778
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK18657.1 GATA 72 107

Links

Other GATA family TFs
Other Cannabis sativa TFs

609 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29908.m006255 Ricinus communis 29908.m006255 N
Al_scaffold_0007_233 Arabidopsis lyrata Al_scaffold_0007_233 N
BGIOSGA026937 Oryza indica BGIOSGA026937 I
BGIOSGA029777 Oryza indica BGIOSGA029777 I
BHLH131 Arabidopsis thaliana AT4G38070 N
BRADI3G36610 Brachypodium distachyon BRADI3G36610 N
BRADI4G29990 Brachypodium distachyon BRADI4G29990 N
cassava34286.m1 Manihot esculenta cassava34286.m1 N
Ca_14981 Cicer arietinum Ca_14981 N
Ciclev10002205m.g Citrus clementina Ciclev10002205m.g N
Cla022500 Citrullus lanatus Cla022500 N
Cucsa.160650 Cucumis sativus Cucsa.160650 N
F775_10096 Aegilops tauschii F775_10096 I
gene20797-v1.0-hybrid Fragaria vesca gene20797-v1.0-hybrid N
GLYMA02G37720 Glycine max GLYMA02G37720 N
Gorai.009G230000 Gossypium raimondii Gorai.009G230000 N
GRMZM2G107276 Zea mays GRMZM2G107276 I
GRMZM2G176141 Zea mays GRMZM2G176141 N
GRMZM2G526668 Zea mays GRMZM2G526668 I
LPERR08G12910 Leersia perrieri LPERR08G12910 I
LPERR09G06880 Leersia perrieri LPERR09G06880 I
MDP0000562627 Malus domestica MDP0000562627 N
MLOC_12832 Hordeum vulgare MLOC_12832 N
MLOC_66385 Hordeum vulgare MLOC_66385 I
MTR_5g066080 Medicago truncatula MTR_5g066080 N
OBART08G15650 Oryza barthii OBART08G15650 I
OGLUM08G16400 Oryza glumaepatula OGLUM08G16400 I
OMERI08G12930 Oryza meridionalis OMERI08G12930 I
OMERI09G07780 Oryza meridionalis OMERI09G07780 I
ONIVA08G16750 Oryza nivara ONIVA08G16750 I
ONIVA09G09550 Oryza nivara ONIVA09G09550 I
OPUNC08G13730 Oryza punctata OPUNC08G13730 I
orange1.1g024930m.g Citrus sinensis orange1.1g024930m.g N
orange1.1g044343m.g Citrus sinensis orange1.1g044343m.g N
ORGLA08G0137400 Oryza glaberrima ORGLA08G0137400 I
ORUFI08G17560 Oryza rufipogon ORUFI08G17560 I
ORUFI09G10670 Oryza rufipogon ORUFI09G10670 I
OS08G0432800 Oryza sativa OS08G0432800 I
OS09G0410700 Oryza sativa OS09G0410700 I
PK01498.1 Cannabis sativa PK01498.1 N
PRUPE_ppa026166mg Prunus persica PRUPE_ppa026166mg N
Sb02g024460 Sorghum bicolor Sb02g024460 N
Sb07g021170 Sorghum bicolor Sb07g021170 I
Si013911m.g Setaria italica Si013911m.g I
Si030496m.g Setaria italica Si030496m.g N
Thhalv10027500m.g Eutrema salsugineum Thhalv10027500m.g N
Traes_4AS_DD16F89E7 Triticum aestivum Traes_4AS_DD16F89E7 I
Traes_4BL_A2B32FCEE Triticum aestivum Traes_4BL_A2B32FCEE I
Traes_4DL_7BD3165FB Triticum aestivum Traes_4DL_7BD3165FB I
Traes_5BL_CF90A7CAE Triticum aestivum Traes_5BL_CF90A7CAE N
TRIUR3_31897 Triticum urartu TRIUR3_31897 I
VIT_18s0001g07410 Vitis vinifera VIT_18s0001g07410 N