chr4.CM0283.270.nd (Lotus japonicus)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 chr4.CM0283.270.nd T197038_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA19
M06893_2.00 		Arabidopsis thaliana
BNGATCBGATY
RATCVGATCNV		 Dap-seq
OMalley et al.(2016)
GATA19_col_a 		0.867 1.000
GATA19
M06894_2.00 		Arabidopsis thaliana
HNGATCBGATY
RATCVGATCND		 Dap-seq
OMalley et al.(2016)
GATA19_colamp_a 		0.867 1.000
GATA20
M06884_2.00 		Arabidopsis thaliana
GATCBGAT
ATCVGATC		 Dap-seq
OMalley et al.(2016)
GATA20_col_a 		0.825 0.944
GATA20
M06885_2.00 		Arabidopsis thaliana
HNGATCNGATBND
HNVATCNGATCND		 Dap-seq
OMalley et al.(2016)
GATA20_colamp_a 		0.825 0.944
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr4.CM0283.270.nd GATA 126 161

Links

Other GATA family TFs
Other Lotus japonicus TFs

132 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R002857 Calypte anna Aan_R002857 I 0.000
Afo_R010658 Aptenodytes forsteri Afo_R010658 I 0.000
Alligator_sinensis_CCG008488.1 Alligator sinensis Alligator_sinensis_CCG008488.1 I 0.000
Brh_R012765 Buceros rhinoceros Brh_R012765 I 0.000
Cmyd_10006750 Chelonia mydas Cmyd_10006750 I 0.000
ENSACAG00000009715 Anolis carolinensis ENSACAG00000009715 I 0.000
ENSAMEG00000020165 Ailuropoda melanoleuca ENSAMEG00000020165 I 0.000
ENSAPLG00000000878 Anas platyrhynchos ENSAPLG00000000878 I 0.000
ENSCSAG00000018801 Chlorocebus sabaeus ENSCSAG00000018801 I 0.000
ENSFALG00000014990 Ficedula albicollis ENSFALG00000014990 I 0.000
ENSGALG00000004274 Gallus gallus ENSGALG00000004274 I 0.000
ENSLACG00000012096 Latimeria chalumnae ENSLACG00000012096 I 0.000
ENSMEUG00000013853 Macropus eugenii ENSMEUG00000013853 I 0.000
ENSMGAG00000002218 Meleagris gallopavo ENSMGAG00000002218 I 0.000
ENSMODG00000001412 Monodelphis domestica ENSMODG00000001412 I 0.000
ENSMPUG00000019429 Mustela putorius furo ENSMPUG00000019429 I 0.000
ENSNLEG00000011342 Nomascus leucogenys ENSNLEG00000011342 I 0.000
ENSOANG00000012950 Ornithorhynchus anatinus ENSOANG00000012950 I 0.000
ENSOARG00000000265 Ovis aries ENSOARG00000000265 I 0.000
ENSP00000405176-D1 Bos grunniens ENSP00000405176-D1 I 0.000
ENSPANG00000001578 Papio anubis ENSPANG00000001578 I 0.000
ENSPSIG00000012843 Pelodiscus sinensis ENSPSIG00000012843 I 0.000
ENSSHAG00000003328 Sarcophilus harrisii ENSSHAG00000003328 I 0.000
ENSSTOG00000004633 Ictidomys tridecemlineatus ENSSTOG00000004633 I 0.000
ENSTGUG00000003194 Taeniopygia guttata ENSTGUG00000003194 I 0.000
Gfo_R012065 Geospiza fortis Gfo_R012065 I 0.000
Ogr06591 Ophisaurus gracilis Ogr06591 I 0.000
Pvit_02271 Pogona vitticeps Pvit_02271 I 0.000
TWIST2 Callithrix jacchus ENSCJAG00000023006 I 0.000
TWIST2 Cavia porcellus ENSCPOG00000025980 I 0.000
TWIST2 Dasypus novemcinctus ENSDNOG00000002434 I 0.000
TWIST2 Canis familiaris ENSCAFG00000012469 I 0.000
TWIST2 Bos taurus ENSBTAG00000021444 I 0.000
Twist2 Rattus norvegicus ENSRNOG00000020355 I 0.000
TWIST2 Sus scrofa ENSSSCG00000016343 I 0.000
TWIST2 Myotis lucifugus ENSMLUG00000023316 I 0.000
TWIST2 Pan troglodytes ENSPTRG00000033910 I 0.000
TWIST2 Otolemur garnettii ENSOGAG00000029007 I 0.000
TWIST2 Oryctolagus cuniculus ENSOCUG00000004073 I 0.000
TWIST2 Echinops telfairi ENSETEG00000009809 I 0.000
Twist2 Mus musculus ENSMUSG00000007805 D 0.000
TWIST2 Homo sapiens ENSG00000233608 I 0.000
TWIST2 Loxodonta africana ENSLAFG00000032174 I 0.000
TWIST2 Macaca mulatta ENSMMUG00000021909 I 0.000