CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Bo5g079990
(
Brassica oleracea
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
Bo5g079990
T199936_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo5g079990.1
GRAS
13
318
LIGTLYECAKAVDNHDVAMTDWLISQLQQMVSVSGEPVQRLGAYMLEGLIAWLASSGSSIYKALRCRDPTGPELLTYLHILYEACPYFKFGYESANGAIAEAVKNERFVHIIDFQISQGGQWVSLIRALGARPGGPPRVRITGIDDPRSSFARQGGLELVGERLGKLAEMYGVPFEFRGAALCCTEVEIEKLGVRNSEALAVNFPLVLHHMPDESVTVENHRDRLLRLVKRLSPNVATLVEQEANTNTAPFLPRFVETMNHYLAVFESIDVKLARDHKERINVEQHCLAREVVNLVVCEGVEREEA
Links
Other
GRAS
family TFs
Other
Brassica oleracea
TFs
14 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Aquca_005_00234
Aquilegia coerulea
Aquca_005_00234
N
0.707
Bo6g022330
Brassica oleracea
Bo6g022330
N
0.947
Bostr.26675s0117
Boechera stricta
Bostr.26675s0117
N
0.928
Bra018860
Brassica rapa
Bra018860
N
0.947
Bra026077
Brassica rapa
Bra026077
N
0.714
Cagra.7055s0004
Capsella grandiflora
Cagra.7055s0004
N
0.921
Carubv10008830m.g
Capsella rubella
Carubv10008830m.g
N
0.921
cassava34699.m1
Manihot esculenta
cassava34699.m1
N
0.707
evm.TU.supercontig_12.194
Carica papaya
evm.TU.supercontig_12.194
N
0.717
Gorai.009G446100
Gossypium raimondii
Gorai.009G446100
N
0.701
SCL5
Arabidopsis thaliana
AT1G50600
N
0.931
SCL5
Arabidopsis lyrata
fgenesh2_kg.1__4145__AT1G50600.1
N
0.770
TCM_030733
Theobroma cacao
TCM_030733
N
0.717
Thhalv10011379m.g
Eutrema salsugineum
Thhalv10011379m.g
N
0.938