CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra017842
(
Brassica rapa
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
Bra017842
T199985_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra017842.1-P
GRAS
144
530
ADSILLEAARAFSDKDTTRAQQILWTLNELSSPYGDTEQKLAYYFLQALFNRMTGSGERCYRTMVTAAATEKTCSFESTRKTVLKFQEVSPWATFGHVAANGAILEAVDGEAKIHIVDISSTFCTQWPTLLEALATRSDDTPHLRLTTVVVANKHVNDQTATHRMMKEIGSRMEKFARLMGVPFKFNIIHHVGDLSEFDLNELDVKADEVLAVNCVCAMHGITPRGNPRDAVISNFRRLRPRIVTIVEEEADLVGDEEQGFDDEFLRSFGECLRWFRVCFESLEESFPRTSNERLMLERVAGRAIVDLVACEHSDSTERRETARKWSRRMRNGGFGAVGYSDEVADDVRALLRRYKEGVWSMVPCSDATGIFLCWRDQPVVWASAWR
Links
Other
GRAS
family TFs
Other
Brassica rapa
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo1g003500
Brassica oleracea
Bo1g003500
N
0.957
Bo3g153360
Brassica oleracea
Bo3g153360
N
0.848
Bo7g118650
Brassica oleracea
Bo7g118650
N
0.989
Bostr.7867s1625
Boechera stricta
Bostr.7867s1625
N
0.908
Bra010606
Brassica rapa
Bra010606
N
0.837
Bra011777
Brassica rapa
Bra011777
N
0.951
Carubv10004568m.g
Capsella rubella
Carubv10004568m.g
N
0.913
SHR
Arabidopsis thaliana
AT4G37650
N
0.908
SHR
Arabidopsis lyrata
scaffold_700314.1
N
0.911
Thhalv10024885m.g
Eutrema salsugineum
Thhalv10024885m.g
N
0.905