CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava34368.m1
(
Manihot esculenta
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
cassava34368.m1
T202086_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava34368.m1
GRAS
266
637
LWSLLPQCAQAVANNDQRAAKELLRQVRQYSSPFGDGNQRLAHFFVNGLEARLAGTGTPGYTPVVSSTTSAADMLKAYHAYITACPFQTMSYLYASHTIMKLAEKVSRLHIIDFGILYGFQWPSLIERLSTRIGGPPKLCITGIEFPQPGFRPLQRVEETGRRLRKYCERFNVPFEYNPIAQKWETIQYEDLKIDRNEMIVVNCLYRLKNLPDDTMVTNSVRDIVLKLMRRINPDIFIHGVVNGTYNAPFFVTRFREALFHFSALFDMIDATIPREEPERMMFEKEIFGRYAMNVIACEGGERVERPETYKQWQVRNIRAGFRQLPLDQENLKKVIATVKSNYNKNFVVDEDGQWMLQGWKGRIVYALSVWK
Links
Other
GRAS
family TFs
Other
Manihot esculenta
TFs
9 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
28650.m000186
Ricinus communis
28650.m000186
N
0.865
28650.m000187
Ricinus communis
28650.m000187
N
0.735
cassava34369.m1
Manihot esculenta
cassava34369.m1
N
0.743
Pm000712
Prunus mume
Pm000712
N
0.700
POPTR_0001s24890
Populus trichocarpa
POPTR_0001s24890
N
0.705
POPTR_0009s03850
Populus trichocarpa
POPTR_0009s03850
N
0.722
PRUPE_ppa021807mg
Prunus persica
PRUPE_ppa021807mg
N
0.700
SapurV1A.0041s0200
Salix purpurea
SapurV1A.0041s0200
N
0.719
TCM_041810
Theobroma cacao
TCM_041810
N
0.703