CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10015988m.g
(
Capsella rubella
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Carubv10015988m.g
T202356_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10015988m
GRAS
144
505
AEQLLNPCALAITSRNSSRVQHYLCVLSELASSSGDANRRLAAFGLRALQHHLSSSSSPVVTFASAEAKMFQKTLLKFYEVSPWFALPNNMANSAILQILAQDPIDKKKDLHIVDIGVSHGMQWPTLLEALSGRPEGPPHRVRITVVSEPSSDIPFSAVPPAYSYGTRLIGFARSLNINLHISVLDKFQLINTSPHENLIVCVQFRLHQLNHSMLDERGEALIALRSLGPKGVVLCENNGECTSIGDFAAGFSMKLEYLWKFLDSTSSGFKEEDSEERKLMEEEATKVLMTGEYVNEGKEKWFERMIKAGFVAEEFGEDAIDGAKSLLRKYDNNWEIRMEDGGTFAGLMWKGESVSFCSLWK
Links
Other
GRAS
family TFs
Other
Capsella rubella
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo5g131770
Brassica oleracea
Bo5g131770
N
0.751
Bostr.7816s0001
Boechera stricta
Bostr.7816s0001
N
0.814
Bra027378
Brassica rapa
Bra027378
N
0.742
Cagra.0736s0042
Capsella grandiflora
Cagra.0736s0042
N
0.974
fgenesh2_kg.3__1487__AT3G13840.1
Arabidopsis lyrata
fgenesh2_kg.3__1487__AT3G13840.1
N
0.834
SCL29
Arabidopsis thaliana
AT3G13840
N
0.828
Thhalv10020543m.g
Eutrema salsugineum
Thhalv10020543m.g
N
0.759