CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_27.254
(
Carica papaya
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
evm.TU.supercontig_27.254
T202522_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_27.254
GRAS
1
294
MSILFQICPYWKFAYTSANVVIKEMMQHEPRIHIIDFQIAQGTQHMMLIKDLATRPGGPPLLRITGLDDSQSNHARGGGLHIVKERLSKFAESYNVPFEFHDATMYDCEVELEHLKVQPGYALAVNFPYVLHHMPDESVSIWNHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFSRFLETLDYYAAMFESIDGGCPRDDKQRISAEQHCVARDIVNMIACEGPERIERHELLGKWRSRFMMAGFSPCPLSPSVRYSAGEVLKDFDKNYALEVRDGALYLKWKMRGMATSSAWR
Links
Other
GRAS
family TFs
Other
Carica papaya
TFs
36 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
A1O3_04501
Capronia epimyces
A1O3_04501
N
A1O5_13077
Cladophialophora psammophila
A1O5_13077
N
A1O7_02415
Cladophialophora yegresii
A1O7_02415
N
A1O9_07285
Exophiala aquamarina
A1O9_07285
N
estExt_Genewise1Plus.C_12818
Neurospora discreta
estExt_Genewise1Plus.C_12818
N
NEUTE1DRAFT_56147
Neurospora tetrasperma
NEUTE1DRAFT_56147
N
PV05_07024
Exophiala xenobiotica
PV05_07024
N
PV06_07909
Exophiala oligosperma
PV06_07909
N
PV08_03448
Exophiala spinifera
PV08_03448
N
PV10_03363
Exophiala mesophila
PV10_03363
N
Z517_04305
Fonsecaea pedrosoi
Z517_04305
N
Z518_02346
Rhinocladiella mackenziei
Z518_02346
N
Z519_11212
Cladophialophora bantiana
Z519_11212
N