Pavir.J16240 (Panicum virgatum)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03514 (GRAS) IPR005202 Pavir.J16240 T203058_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J16240.1.p GRAS 266 637
Pavir.J16240.2.p GRAS 266 637
Pavir.J16240.3.p GRAS 266 637
Pavir.J16240.4.p GRAS 266 637
Pavir.J16240.5.p GRAS 266 637
Pavir.J16240.6.p GRAS 266 519

Links

Other GRAS family TFs
Other Panicum virgatum TFs

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL005176 Aedes aegypti AAEL005176 I
AATE020159 Anopheles atroparvus AATE020159 I
ACHR010032 Anopheles christyi ACHR010032 I
ACOM031685 Anopheles coluzzii ACOM031685 I
ACUA022497 Anopheles culicifacies ACUA022497 I
AFAF007486 Anopheles farauti AFAF007486 I
AFUN002786 Anopheles funestus AFUN002786 I
AGAP006791 Anopheles gambiae AGAP006791 I
AMEC013076 Anopheles melas AMEC013076 I
AMEM013788 Anopheles merus AMEM013788 I
AQUA003879 Anopheles quadriannulatus AQUA003879 I
ASIS022059 Anopheles sinensis ASIS022059 I
BGIBMGA000607 Bombyx mori BGIBMGA000607 I
BGIOSGA017023 Oryza indica BGIOSGA017023 N 0.773
BRADI1G03620 Brachypodium distachyon BRADI1G03620 N 0.759
CLEC001353 Cimex lectularius CLEC001353 I
CPIJ017517 Culex quinquefasciatus CPIJ017517 I
CpipJ_CPIJ017517 Culex pipiens CpipJ_CPIJ017517 I
D917_06340 Trichinella nativa D917_06340 I
D918_03987 Trichuris suis D918_03987 I
EEL_0000648301 Elaeophora elaphi EEL_0000648301 N
EFV52761 Trichinella spiralis EFV52761 I
ENSLOCG00000002246 Lepisosteus oculatus ENSLOCG00000002246 I
ENSONIG00000003152 Oreochromis niloticus ENSONIG00000003152 I
ENSONIG00000016758 Oreochromis niloticus ENSONIG00000016758 I
ENSSHAG00000001992 Sarcophilus harrisii ENSSHAG00000001992 I
ENSXMAG00000011590 Xiphophorus maculatus ENSXMAG00000011590 I
F775_04155 Aegilops tauschii F775_04155 N 0.724
GRMZM2G368909 Zea mays GRMZM2G368909 N 0.846
HHAL001092-PA Halyomorpha halys HHAL001092-PA I
HMEL014701 Heliconius melpomene HMEL014701 I
KGM_21493 Danaus plexippus KGM_21493 I
L798_11766 Zootermopsis nevadensis L798_11766 I
LCUP005777 Lucilia cuprina LCUP005777 I
LPERR04G19190 Leersia perrieri LPERR04G19190 N 0.749
MCINX009925 Melitaea cinxia MCINX009925 I
MDOA001622 Musca domestica MDOA001622 I
MLOC_2933 Hordeum vulgare MLOC_2933 N 0.719
NEMVEDRAFT_v1g108258 Nematostella vectensis NEMVEDRAFT_v1g108258 I
OB04G30360 Oryza brachyantha OB04G30360 N 0.762
OBART04G23460 Oryza barthii OBART04G23460 N 0.768
OGLUM04G23390 Oryza glumaepatula OGLUM04G23390 N 0.773
OLONG_013234 Oryza longistaminata OLONG_013234 N 0.770
ONIVA04G22790 Oryza nivara ONIVA04G22790 N 0.773
OPUNC04G20980 Oryza punctata OPUNC04G20980 N 0.762
ORGLA04G0200000 Oryza glaberrima ORGLA04G0200000 N 0.770
ORUFI04G25140 Oryza rufipogon ORUFI04G25140 N 0.773
OS04G0590400 Oryza sativa OS04G0590400 N 0.773
Pavir.Ia00281 Panicum virgatum Pavir.Ia00281 N 0.932
PHUM474180 Pediculus humanus PHUM474180 I
Sb01g003110 Sorghum bicolor Sb01g003110 N 0.842
SCRT1 Macaca mulatta ENSMMUG00000028886 I
scrt2 Danio rerio ENSDARG00000056175 I
scrt2 Gasterosteus aculeatus ENSGACG00000011802 I
Si034627m.g Setaria italica Si034627m.g N 0.862
TMUE_s0027002700 Trichuris muris TMUE_s0027002700 I
Traes_4DS_050789E2A Triticum aestivum Traes_4DS_050789E2A N 0.700
Traes_5AL_9AE0ED26A Triticum aestivum Traes_5AL_9AE0ED26A N 0.811
Traes_5BL_DF8EC4A24 Triticum aestivum Traes_5BL_DF8EC4A24 N 0.716
TTRE_0000441701 Trichuris trichiura TTRE_0000441701 I