CpipJ_CPIJ018547 (Culex pipiens)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 CpipJ_CPIJ018547 T203738_2.00 Broad (2016-May-1)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.867 0.982
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.867 0.982
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.867 0.982
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.867 0.982
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.867 0.965
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.867 0.965
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.867 0.965
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.867 0.965
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.867 0.965
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.865 0.965
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.865 0.965
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.865 0.965
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.865 0.965
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.965
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.865 0.965
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.865 0.947
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.859 0.947
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CpipJ_CPIJ018547-RA Homeodomain 157 213

Links

Other Homeodomain family TFs
Other Culex pipiens TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
E4F1 Bos taurus ENSBTAG00000009961 I
E4F1 Tursiops truncatus ENSTTRG00000008208 I
E4F1 Sus scrofa ENSSSCG00000008047 I
E4f1 Rattus norvegicus ENSRNOG00000009224 I
E4F1 Pteropus vampyrus ENSPVAG00000005098 I
E4F1 Procavia capensis ENSPCAG00000004337 I
E4F1 Ochotona princeps ENSOPRG00000002573 I
E4F1 Otolemur garnettii ENSOGAG00000006594 I
E4F1 Oryctolagus cuniculus ENSOCUG00000025484 I
E4f1 Mus musculus ENSMUSG00000024137 D
E4F1 Macaca mulatta ENSMMUG00000019235 I
E4F1 Myotis lucifugus ENSMLUG00000016786 I
E4F1 Loxodonta africana ENSLAFG00000000725 I
E4F1 Callithrix jacchus ENSCJAG00000015000 I
E4F1 Cavia porcellus ENSCPOG00000002052 I
E4F1 Dasypus novemcinctus ENSDNOG00000016503 I
E4f1 Dipodomys ordii ENSDORG00000001751 I
E4F1 Equus caballus ENSECAG00000008036 I
E4F1 Homo sapiens ENSG00000167967 D
E4F1 Gorilla gorilla ENSGGOG00000014241 I
E4F1 Microcebus murinus ENSMICG00000005892 I
ENSAMEG00000017837 Ailuropoda melanoleuca ENSAMEG00000017837 I
ENSCSAG00000010850 Chlorocebus sabaeus ENSCSAG00000010850 I
ENSMPUG00000015378 Mustela putorius furo ENSMPUG00000015378 I
ENSNLEG00000009261 Nomascus leucogenys ENSNLEG00000009261 I
ENSOARG00000017910 Ovis aries ENSOARG00000017910 I
ENSP00000301727 Macaca fascicularis ENSP00000301727 I
ENSP00000301727-D1 Bos grunniens ENSP00000301727-D1 I
ENSSTOG00000013171 Ictidomys tridecemlineatus ENSSTOG00000013171 I
Myotis_brandtii_E4f1_10005619 Myotis brandtii Myotis_brandtii_E4f1_10005619 I