Bo2g005230 (Brassica oleracea)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bo2g005230 T204864_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.818 0.893
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.818 0.893
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.818 0.893
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.767 0.679
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.711 0.571
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.711 0.571
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.691 0.571
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.691 0.571
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo2g005230.1 Homeodomain 77 132

Links

Other Homeodomain family TFs
Other Brassica oleracea TFs

239 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CH063_02132 Colletotrichum higginsianum CH063_02132 N
FFUJ_06535 Fusarium fujikuroi FFUJ_06535 N
fgenesh1_pg.sca_44_chr3_2_0000044 Nectria haematococca fgenesh1_pg.sca_44_chr3_2_0000044 N
FGRRES_08135 Fusarium graminearum FGRRES_08135 N
FOXG_02820 Fusarium oxysporum FOXG_02820 N
FPSE_05458 Fusarium pseudograminearum FPSE_05458 N
FVEG_01650 Fusarium verticillioides FVEG_01650 N
NechaG77217 Fusarium solani NechaG77217 N
PFICI_04563 Pestalotiopsis fici PFICI_04563 N
SBOR_4351 Sclerotinia borealis SBOR_4351 N
Z517_03305 Fonsecaea pedrosoi Z517_03305 N
Z518_06775 Rhinocladiella mackenziei Z518_06775 N