Bra003753 (Brassica rapa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bra003753 T205039_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.718 0.628
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.674 0.488
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.674 0.488
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.674 0.488
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.674 0.488
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.636 0.605
KNAT7
M01064_2.00 		Arabidopsis thaliana
TGACRKST
ASMYGTCA		 PBM
Sullivan et al.(2014)
pTH9798 		0.603 0.419
KNAT4
M01238_2.00 		Arabidopsis thaliana
NNGACNNNN
NNNNGTCNN		 PBM
Lambert et al.(2019)
pTH9968 		0.600 0.419
KNAT3
M02051_2.00 		Arabidopsis thaliana
NNNGACVBNN
NNVBGTCNNN		 PBM
Weirauch et al.(2014)
pTH7600 		0.600 0.419
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra003753.1-P Homeodomain 321 365

Links

Other Homeodomain family TFs
Other Brassica rapa TFs

1224 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R009291 Calypte anna Aan_R009291 I 0.000
Afo_R001565 Aptenodytes forsteri Afo_R001565 I 0.000
Brh_R009924 Buceros rhinoceros Brh_R009924 I 0.000
ENSAMEG00000015231 Ailuropoda melanoleuca ENSAMEG00000015231 I 0.000
ENSAMXG00000012133 Astyanax mexicanus ENSAMXG00000012133 I 0.000
ENSBTAP00000016123-D1 Bos grunniens ENSBTAP00000016123-D1 I 0.000
ENSCPOG00000008322 Cavia porcellus ENSCPOG00000008322 I 0.000
ENSCSAG00000013989 Chlorocebus sabaeus ENSCSAG00000013989 I 0.000
ENSFALG00000001298 Ficedula albicollis ENSFALG00000001298 I 0.000
ENSLACG00000016334 Latimeria chalumnae ENSLACG00000016334 I 0.000
ENSMEUG00000000224 Macropus eugenii ENSMEUG00000000224 I 0.000
ENSMICG00000012773 Microcebus murinus ENSMICG00000012773 I 0.000
ENSMPUG00000013510 Mustela putorius furo ENSMPUG00000013510 I 0.000
ENSNLEG00000017520 Nomascus leucogenys ENSNLEG00000017520 I 0.000
ENSOARG00000010974 Ovis aries ENSOARG00000010974 I 0.000
ENSONIG00000012590 Oreochromis niloticus ENSONIG00000012590 I 0.000
ENSOPRG00000016390 Ochotona princeps ENSOPRG00000016390 I 0.000
ENSP00000362170 Macaca fascicularis ENSP00000362170 I 0.000
ENSPANG00000024836 Papio anubis ENSPANG00000024836 I 0.000
ENSPFOG00000005824 Poecilia formosa ENSPFOG00000005824 I 0.000
ENSPPYG00000019640 Pongo abelii ENSPPYG00000019640 I 0.000
ENSPSIG00000007027 Pelodiscus sinensis ENSPSIG00000007027 I 0.000
ENSSTOG00000007837 Ictidomys tridecemlineatus ENSSTOG00000007837 I 0.000
ENSTSYG00000001421 Tarsius syrichta ENSTSYG00000001421 I 0.000
ENSXMAG00000013359 Xiphophorus maculatus ENSXMAG00000013359 I 0.000
NAIF1 Sus scrofa ENSSSCG00000005630 I 0.000
NAIF1 Sorex araneus ENSSARG00000011449 I 0.000
Naif1 Rattus norvegicus ENSRNOG00000050204 I 0.000
NAIF1 Pteropus vampyrus ENSPVAG00000002431 I 0.000
NAIF1 Pan troglodytes ENSPTRG00000021409 I 0.000
NAIF1 Taeniopygia guttata ENSTGUG00000003526 I 0.000
naif1 Takifugu rubripes ENSTRUG00000013589 I 0.000
NAIF1 Tursiops truncatus ENSTTRG00000016473 I 0.000
naif1 Xenopus tropicalis XB-GENE-986890 D 0.000
NAIF1 Otolemur garnettii ENSOGAG00000031498 I 0.000
naif1 Oryzias latipes ENSORLG00000018283 I 0.000
NAIF1 Bos taurus ENSBTAG00000012156 I 0.000
NAIF1 Callithrix jacchus ENSCJAG00000019895 I 0.000
naif1 Danio rerio ENSDARG00000062753 I 0.000
NAIF1 Dasypus novemcinctus ENSDNOG00000034148 I 0.000
NAIF1 Equus caballus ENSECAG00000014827 I 0.000
NAIF1 Erinaceus europaeus ENSEEUG00000009746 I 0.000
NAIF1 Felis catus ENSFCAG00000001494 I 0.000
NAIF1 Homo sapiens ENSG00000171169 I 0.000
naif1 Gasterosteus aculeatus ENSGACG00000018458 I 0.000
NAIF1 Gallus gallus ENSGALG00000027734 I 0.000
NAIF1 Gorilla gorilla ENSGGOG00000011178 I 0.000
NAIF1 Loxodonta africana ENSLAFG00000031104 I 0.000
NAIF1 Meleagris gallopavo ENSMGAG00000003576 I 0.000
NAIF1 Myotis lucifugus ENSMLUG00000013565 I 0.000
NAIF1 Macaca mulatta ENSMMUG00000004685 I 0.000
NAIF1 Monodelphis domestica ENSMODG00000005695 I 0.000
Naif1 Mus musculus ENSMUSG00000039164 I 0.000
NAIF1 Oryctolagus cuniculus ENSOCUG00000013385 I 0.000
NAIF1 Procavia capensis ENSPCAG00000011530 I 0.000
naif1.S Xenopus laevis XB-GENE-986896 D 0.000
NAIF1_CHICK Gallus gallus NAIF1_CHICK D 0.000
Pvit_08550 Pogona vitticeps Pvit_08550 I 0.000