Bra015845 (Brassica rapa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bra015845 T205096_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.780 0.673
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.636 0.571
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.611 0.429
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.611 0.429
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.611 0.429
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.611 0.429
KNAT3
M02051_2.00 		Arabidopsis thaliana
NNNGACVBNN
NNVBGTCNNN		 PBM
Weirauch et al.(2014)
pTH7600 		0.601 0.429
KNAT4
M01238_2.00 		Arabidopsis thaliana
NNGACNNNN
NNNNGTCNN		 PBM
Lambert et al.(2019)
pTH9968 		0.601 0.408
KNAT7
M01064_2.00 		Arabidopsis thaliana
TGACRKST
ASMYGTCA		 PBM
Sullivan et al.(2014)
pTH9798 		0.600 0.388
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra015845.1-P Homeodomain 346 397

Links

Other Homeodomain family TFs
Other Brassica rapa TFs

1213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BBA_03371 Beauveria bassiana BBA_03371 N 0.000
Bcin14g01790 Botrytis cinerea Bcin14g01790 N 0.000
BGHDH14_bgh01392 Blumeria graminis BGHDH14_bgh01392 N 0.000
CFIO01_02399 Colletotrichum fioriniae CFIO01_02399 N 0.000
CH063_10919 Colletotrichum higginsianum CH063_10919 N 0.000
CHGG_02666 Chaetomium globosum CHGG_02666 N 0.000
CMQ_6445 Grosmannia clavigera CMQ_6445 N 0.000
Cob_00186 Colletotrichum orbiculare Cob_00186 N 0.000
CPUR_06254 Claviceps purpurea CPUR_06254 N 0.000
CSUB01_07808 Colletotrichum sublineola CSUB01_07808 N 0.000
estExt_fgenesh1_pm.C_sca_5_chr5_3_00364 Nectria haematococca estExt_fgenesh1_pm.C_sca_5_chr5_3_00364 N 0.000
EV44_g2643 Erysiphe necator EV44_g2643 N 0.000
FFUJ_07085 Fusarium fujikuroi FFUJ_07085 N 0.000
FGRRES_10360 Fusarium graminearum FGRRES_10360 N 0.000
FOXG_05039 Fusarium oxysporum FOXG_05039 N 0.000
FPSE_01208 Fusarium pseudograminearum FPSE_01208 N 0.000
FVEG_03094 Fusarium verticillioides FVEG_03094 N 0.000
GLRG_07521 Colletotrichum graminicola GLRG_07521 N 0.000
GMDG_00231 Pseudogymnoascus destructans GMDG_00231 N 0.000
HMPREF1624_00064 Sporothrix schenckii HMPREF1624_00064 N 0.000
M7I_5913 Glarea lozoyensis M7I_5913 N 0.000
MAC_09184 Metarhizium acridum MAC_09184 N 0.000
MAJ_08041 Metarhizium majus MAJ_08041 N 0.000
MAM_08248 Metarhizium album MAM_08248 N 0.000
MANI_016295 Metarhizium anisopliae MANI_016295 N 0.000
MBM_02170 Marssonina brunnea MBM_02170 N 0.000
MBR_04029 Metarhizium brunneum MBR_04029 N 0.000
MGG_02474 Magnaporthe oryzae MGG_02474 N 0.000
MGU_06622 Metarhizium guizhouense MGU_06622 N 0.000
MYCTH_2300604 Myceliophthora thermophila MYCTH_2300604 N 0.000
NechaG104560 Fusarium solani NechaG104560 N 0.000
OCS_00818 Ophiocordyceps sinensis OCS_00818 N 0.000
OIDMADRAFT_16851 Oidiodendron maius OIDMADRAFT_16851 N 0.000
S40285_04464 Stachybotrys chlorohalonata S40285_04464 N 0.000
S40288_01275 Stachybotrys chartarum S40288_01275 N 0.000
SBOR_5838 Sclerotinia borealis SBOR_5838 N 0.000
SPBR_07008 Sporothrix brasiliensis SPBR_07008 N 0.000
SS1G_10276 Sclerotinia sclerotiorum SS1G_10276 N 0.000
THITE_2106736 Thielavia terrestris THITE_2106736 N 0.000
TRIREDRAFT_5675 Trichoderma reesei TRIREDRAFT_5675 N 0.000
TRIVIDRAFT_55061 Trichoderma virens TRIVIDRAFT_55061 N 0.000
UV8b_6781 Ustilaginoidea virens UV8b_6781 N 0.000
V499_05616 Pseudogymnoascus pannorum V499_05616 N 0.000
VDAG_00255 Verticillium dahliae VDAG_00255 N 0.000
VDBG_00641 Verticillium alfalfae VDBG_00641 N 0.000
VDBG_00641 Verticillium albo atrum VDBG_00641 N 0.000
VHEMI00901 Torrubiella hemipterigena VHEMI00901 N 0.000
X797_004608 Metarhizium robertsii X797_004608 N 0.000