ENSCING00000005828 (Ciona intestinalis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSCING00000005828 T207827_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.862 0.947
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.862 0.947
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.862 0.947
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.862 0.947
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.862 0.912
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.862 0.912
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.862 0.912
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.862 0.912
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.862 0.912
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.861 0.930
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.861 0.930
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.861 0.930
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.861 0.930
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.861 0.930
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.861 0.930
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.861 0.930
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.855 0.912
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000012025 Homeodomain 205 261

Links

Other Homeodomain family TFs
Other Ciona intestinalis TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cmyd_10001489 Chelonia mydas Cmyd_10001489 N
Cmyd_10001989 Chelonia mydas Cmyd_10001989 N
Cmyd_10002130 Chelonia mydas Cmyd_10002130 N
Cmyd_10003126 Chelonia mydas Cmyd_10003126 N
Cmyd_10003172 Chelonia mydas Cmyd_10003172 N
Cmyd_10003439 Chelonia mydas Cmyd_10003439 N
Cmyd_10003504 Chelonia mydas Cmyd_10003504 N
Cmyd_10003577 Chelonia mydas Cmyd_10003577 N
Cmyd_10003654 Chelonia mydas Cmyd_10003654 N
Cmyd_10003938 Chelonia mydas Cmyd_10003938 N
Cmyd_10004410 Chelonia mydas Cmyd_10004410 N
Cmyd_10004639 Chelonia mydas Cmyd_10004639 N
Cmyd_10004763 Chelonia mydas Cmyd_10004763 N
Cmyd_10004862 Chelonia mydas Cmyd_10004862 N
Cmyd_10005354 Chelonia mydas Cmyd_10005354 N
Cmyd_10005732 Chelonia mydas Cmyd_10005732 N
Cmyd_10006184 Chelonia mydas Cmyd_10006184 N
Cmyd_10006400 Chelonia mydas Cmyd_10006400 N
Cmyd_10006621 Chelonia mydas Cmyd_10006621 N
Cmyd_10006667 Chelonia mydas Cmyd_10006667 N
Cmyd_10006722 Chelonia mydas Cmyd_10006722 N
Cmyd_10006724 Chelonia mydas Cmyd_10006724 N
Cmyd_10007527 Chelonia mydas Cmyd_10007527 N
Cmyd_10007685 Chelonia mydas Cmyd_10007685 N
Cmyd_10007900 Chelonia mydas Cmyd_10007900 N
Cmyd_10008315 Chelonia mydas Cmyd_10008315 N
Cmyd_10008565 Chelonia mydas Cmyd_10008565 N
Cmyd_10008649 Chelonia mydas Cmyd_10008649 N
Cmyd_10008690 Chelonia mydas Cmyd_10008690 N
Cmyd_10008722 Chelonia mydas Cmyd_10008722 N
Cmyd_10009235 Chelonia mydas Cmyd_10009235 N
Cmyd_10009304 Chelonia mydas Cmyd_10009304 N
Cmyd_10009310 Chelonia mydas Cmyd_10009310 N
Cmyd_10009391 Chelonia mydas Cmyd_10009391 N
Cmyd_10009634 Chelonia mydas Cmyd_10009634 N
Cmyd_10009643 Chelonia mydas Cmyd_10009643 N
Cmyd_10009827 Chelonia mydas Cmyd_10009827 N
Cmyd_10010235 Chelonia mydas Cmyd_10010235 N
Cmyd_10010344 Chelonia mydas Cmyd_10010344 N
Cmyd_10010768 Chelonia mydas Cmyd_10010768 N
Cmyd_10011123 Chelonia mydas Cmyd_10011123 N
Cmyd_10011536 Chelonia mydas Cmyd_10011536 N
Cmyd_10011542 Chelonia mydas Cmyd_10011542 N
Cmyd_10011896 Chelonia mydas Cmyd_10011896 N
Cmyd_10012053 Chelonia mydas Cmyd_10012053 N
Cmyd_10012062 Chelonia mydas Cmyd_10012062 N
Cmyd_10012069 Chelonia mydas Cmyd_10012069 N
Cmyd_10012100 Chelonia mydas Cmyd_10012100 N
Cmyd_10012141 Chelonia mydas Cmyd_10012141 N
Cmyd_10012194 Chelonia mydas Cmyd_10012194 N
Cmyd_10012220 Chelonia mydas Cmyd_10012220 N
Cmyd_10012472 Chelonia mydas Cmyd_10012472 N
Cmyd_10012482 Chelonia mydas Cmyd_10012482 N
Cmyd_10012804 Chelonia mydas Cmyd_10012804 N
Cmyd_10012972 Chelonia mydas Cmyd_10012972 N
Cmyd_10013046 Chelonia mydas Cmyd_10013046 N
Cmyd_10013718 Chelonia mydas Cmyd_10013718 N
Cmyd_10014022 Chelonia mydas Cmyd_10014022 N
Cmyd_10014427 Chelonia mydas Cmyd_10014427 N
Cmyd_10014586 Chelonia mydas Cmyd_10014586 N
Cmyd_10014771 Chelonia mydas Cmyd_10014771 N
Cmyd_10014779 Chelonia mydas Cmyd_10014779 N
Cmyd_10014889 Chelonia mydas Cmyd_10014889 N
Cmyd_10014894 Chelonia mydas Cmyd_10014894 N
Cmyd_10014903 Chelonia mydas Cmyd_10014903 N
Cmyd_10015037 Chelonia mydas Cmyd_10015037 N
Cmyd_10015316 Chelonia mydas Cmyd_10015316 N
Cmyd_10016112 Chelonia mydas Cmyd_10016112 N
Cmyd_10016324 Chelonia mydas Cmyd_10016324 N
Cmyd_10016549 Chelonia mydas Cmyd_10016549 N
Cmyd_10016788 Chelonia mydas Cmyd_10016788 N
Cmyd_10016810 Chelonia mydas Cmyd_10016810 N
Cmyd_10016912 Chelonia mydas Cmyd_10016912 N
Cmyd_10016989 Chelonia mydas Cmyd_10016989 N
Cmyd_10017127 Chelonia mydas Cmyd_10017127 N
Cmyd_10017203 Chelonia mydas Cmyd_10017203 N
Cmyd_10017310 Chelonia mydas Cmyd_10017310 N
Cmyd_10017906 Chelonia mydas Cmyd_10017906 N
Cmyd_10017938 Chelonia mydas Cmyd_10017938 N
Cmyd_10017985 Chelonia mydas Cmyd_10017985 N