ENSCSAVG00000001801 (Ciona savignyi)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSCSAVG00000001801 T208438_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
pha-2
M02184_2.00 		Caenorhabditis elegans
NNNATNDNNN
NNNHNATNNN		 PBM
Weirauch et al.(2014)
pTH6423 		0.709 0.825
HHEX
M06541_2.00 		Drosophila melanogaster
WYBAATWA
TWATTVRW		 B1H
Mathelier et al.(2014)
MA0183.1 		0.683 0.667
HHEX
M06358_2.00 		Drosophila melanogaster
WYBAATWA
TWATTVRW		 B1H
Zhu et al.(2011)
CG7056_Cell_FBgn0038852 		0.683 0.667
HHEX
M06359_2.00 		Drosophila melanogaster
NYBAATWR
YWATTVRN		 B1H
Zhu et al.(2011)
CG7056_SOLEXA_FBgn0038852 		0.683 0.667
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCSAVP00000003040 Homeodomain 259 315

Links

Other Homeodomain family TFs
Other Ciona savignyi TFs

161 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30226.m002015 Ricinus communis 30226.m002015 I 0.000
AMTR_s00026p00233150 Amborella trichopoda AMTR_s00026p00233150 I 0.000
AMTR_s00066p00143040 Amborella trichopoda AMTR_s00066p00143040 I 0.000
BGIOSGA026851 Oryza indica BGIOSGA026851 I 0.000
Bo1g003400 Brassica oleracea Bo1g003400 I 0.000
Bo3g153210 Brassica oleracea Bo3g153210 I 0.000
Bo4g151080 Brassica oleracea Bo4g151080 I 0.000
Bo7g118750 Brassica oleracea Bo7g118750 I 0.000
Bostr.19427s0048 Boechera stricta Bostr.19427s0048 I 0.000
Bostr.25542s0240 Boechera stricta Bostr.25542s0240 I 0.000
Bra010612 Brassica rapa Bra010612 I 0.000
Bra011786 Brassica rapa Bra011786 I 0.000
Bra017853 Brassica rapa Bra017853 I 0.000
Bra030200 Brassica rapa Bra030200 I 0.000
BRADI1G51257 Brachypodium distachyon BRADI1G51257 I 0.000
BRADI1G51270 Brachypodium distachyon BRADI1G51270 I 0.000
BRADI3G37810 Brachypodium distachyon BRADI3G37810 I 0.000
BRADI4G31690 Brachypodium distachyon BRADI4G31690 I 0.000
Cagra.0630s0001 Capsella grandiflora Cagra.0630s0001 I 0.000
Carubv10005427m.g Capsella rubella Carubv10005427m.g I 0.000
cassava11733.valid.m1 Manihot esculenta cassava11733.valid.m1 I 0.000
Ca_09371 Cicer arietinum Ca_09371 I 0.000
Ca_12769 Cicer arietinum Ca_12769 I 0.000
Ciclev10026197m.g Citrus clementina Ciclev10026197m.g I 0.000
Cla000202 Citrullus lanatus Cla000202 I 0.000
Cla014275 Citrullus lanatus Cla014275 I 0.000
Cucsa.103500 Cucumis sativus Cucsa.103500 I 0.000
Cucsa.242570 Cucumis sativus Cucsa.242570 I 0.000
Eucgr.A02462 Eucalyptus grandis Eucgr.A02462 I 0.000
Eucgr.I00660 Eucalyptus grandis Eucgr.I00660 I 0.000
evm.TU.supercontig_1246.1 Carica papaya evm.TU.supercontig_1246.1 I 0.000
evm.TU.supercontig_129.55 Carica papaya evm.TU.supercontig_129.55 I 0.000
e_gw1.42.227.1 Physcomitrella patens e_gw1.42.227.1 I 0.000
F775_16993 Aegilops tauschii F775_16993 I 0.000
F775_17774 Aegilops tauschii F775_17774 I 0.000
fgenesh1_pg.scaffold_42000146 Physcomitrella patens fgenesh1_pg.scaffold_42000146 I 0.000
gene05590-v1.0-hybrid Fragaria vesca gene05590-v1.0-hybrid I 0.000
GLYMA01G40450 Glycine max GLYMA01G40450 I 0.000
GLYMA03G26701 Glycine max GLYMA03G26701 I 0.000
GLYMA07G14270 Glycine max GLYMA07G14270 I 0.000
GLYMA11G04840 Glycine max GLYMA11G04840 I 0.000
GLYMA17G15380 Glycine max GLYMA17G15380 I 0.000
GLYMA17G16930 Glycine max GLYMA17G16930 I 0.000
GLYMA18G48880 Glycine max GLYMA18G48880 I 0.000
Gorai.007G057100 Gossypium raimondii Gorai.007G057100 I 0.000
Gorai.007G228000 Gossypium raimondii Gorai.007G228000 I 0.000
Gorai.008G086700 Gossypium raimondii Gorai.008G086700 I 0.000
GRMZM2G068672 Zea mays GRMZM2G068672 I 0.000
GRMZM2G106276 Zea mays GRMZM2G106276 I 0.000
GRMZM2G127537 Zea mays GRMZM2G127537 I 0.000
GRMZM2G134260 Zea mays GRMZM2G134260 I 0.000
GRMZM2G142962 Zea mays GRMZM2G142962 I 0.000
GRMZM2G148074 Zea mays GRMZM2G148074 I 0.000
GSMUA_Achr8G26480_001 Musa acuminata GSMUA_Achr8G26480_001 I 0.000
GSMUA_Achr9G09800_001 Musa acuminata GSMUA_Achr9G09800_001 I 0.000
GSMUA_Achr9G15710_001 Musa acuminata GSMUA_Achr9G15710_001 I 0.000
GSMUA_AchrUn_randomG09030_001 Musa acuminata GSMUA_AchrUn_randomG09030_001 I 0.000
GSMUA_AchrUn_randomG15520_001 Musa acuminata GSMUA_AchrUn_randomG15520_001 I 0.000
HAT22 Arabidopsis thaliana AT4G37790 D 0.000
HAT22 Arabidopsis lyrata fgenesh2_kg.7__270__AT4G37790.1 I 0.000
HAT9 Arabidopsis thaliana AT2G22800 I 0.000
HAT9 Arabidopsis lyrata fgenesh2_kg.4__202__AT2G22800.1 I 0.000
HOX1 Oryza indica BGIOSGA033443 I 0.000
HOX1 Oryza sativa OS10G0561800 I 0.000
HOX11 Oryza indica BGIOSGA029665 I 0.000
HOX2 Oryza indica BGIOSGA022272 I 0.000
HOX2 Oryza sativa OS06G0140700 I 0.000
HOX28 Oryza indica BGIOSGA022270 I 0.000
HOX28 Oryza sativa OS06G0140400 I 0.000
HOX7 Oryza indica BGIOSGA006230 I 0.000
HOX7 Oryza sativa OS02G0565600 I 0.000
LjT36B17.20.nd Lotus japonicus LjT36B17.20.nd I 0.000
LPERR02G17070 Leersia perrieri LPERR02G17070 I 0.000
LPERR06G02270 Leersia perrieri LPERR06G02270 I 0.000
LPERR06G02280 Leersia perrieri LPERR06G02280 I 0.000
LPERR08G14440 Leersia perrieri LPERR08G14440 I 0.000
LPERR09G08720 Leersia perrieri LPERR09G08720 I 0.000
LPERR10G14410 Leersia perrieri LPERR10G14410 I 0.000
Lus10004377.g Linum usitatissimum Lus10004377.g I 0.000
Lus10040175.g Linum usitatissimum Lus10040175.g I 0.000
MDP0000163095 Malus domestica MDP0000163095 I 0.000
mgf001702m Mimulus guttatus mgf001702m I 0.000
mgf012660m Mimulus guttatus mgf012660m I 0.000
mgf024542m Mimulus guttatus mgf024542m I 0.000
MLOC_54441 Hordeum vulgare MLOC_54441 I 0.000
MLOC_56648 Hordeum vulgare MLOC_56648 I 0.000
MLOC_77955 Hordeum vulgare MLOC_77955 I 0.000
MTR_4g097600 Medicago truncatula MTR_4g097600 I 0.000
MTR_4g100550 Medicago truncatula MTR_4g100550 I 0.000
MTR_5g014890 Medicago truncatula MTR_5g014890 I 0.000
OB06G12390 Oryza brachyantha OB06G12390 I 0.000
OB10G25660 Oryza brachyantha OB10G25660 I 0.000
OBART02G21000 Oryza barthii OBART02G21000 I 0.000
OBART06G02560 Oryza barthii OBART06G02560 I 0.000
OBART09G12140 Oryza barthii OBART09G12140 I 0.000
OBART10G18570 Oryza barthii OBART10G18570 I 0.000
OGLUM02G21270 Oryza glumaepatula OGLUM02G21270 I 0.000
OGLUM06G02590 Oryza glumaepatula OGLUM06G02590 I 0.000
OGLUM06G02610 Oryza glumaepatula OGLUM06G02610 I 0.000
OGLUM08G18270 Oryza glumaepatula OGLUM08G18270 I 0.000
OGLUM09G12570 Oryza glumaepatula OGLUM09G12570 I 0.000
OGLUM10G18660 Oryza glumaepatula OGLUM10G18660 I 0.000
OMERI02G20780 Oryza meridionalis OMERI02G20780 I 0.000
OMERI06G02490 Oryza meridionalis OMERI06G02490 I 0.000
OMERI06G02830 Oryza meridionalis OMERI06G02830 I 0.000
OMERI08G00390 Oryza meridionalis OMERI08G00390 I 0.000
OMERI08G14040 Oryza meridionalis OMERI08G14040 I 0.000
OMERI09G09650 Oryza meridionalis OMERI09G09650 I 0.000
ONIVA02G23130 Oryza nivara ONIVA02G23130 I 0.000
ONIVA06G03230 Oryza nivara ONIVA06G03230 I 0.000
ONIVA06G03250 Oryza nivara ONIVA06G03250 I 0.000
ONIVA09G13320 Oryza nivara ONIVA09G13320 I 0.000
OPUNC02G19040 Oryza punctata OPUNC02G19040 I 0.000
OPUNC06G02400 Oryza punctata OPUNC06G02400 I 0.000
OPUNC06G02410 Oryza punctata OPUNC06G02410 I 0.000
OPUNC08G15320 Oryza punctata OPUNC08G15320 I 0.000
OPUNC09G10660 Oryza punctata OPUNC09G10660 I 0.000
OPUNC10G16910 Oryza punctata OPUNC10G16910 I 0.000
orange1.1g022713m.g Citrus sinensis orange1.1g022713m.g I 0.000
ORGLA02G0180800 Oryza glaberrima ORGLA02G0180800 I 0.000
ORGLA06G0025500 Oryza glaberrima ORGLA06G0025500 I 0.000
ORGLA06G0025700 Oryza glaberrima ORGLA06G0025700 I 0.000
ORGLA08G0152800 Oryza glaberrima ORGLA08G0152800 I 0.000
ORGLA10G0137100 Oryza glaberrima ORGLA10G0137100 I 0.000
ORUFI02G22050 Oryza rufipogon ORUFI02G22050 I 0.000
ORUFI06G02550 Oryza rufipogon ORUFI06G02550 I 0.000
ORUFI06G02570 Oryza rufipogon ORUFI06G02570 I 0.000
ORUFI08G19510 Oryza rufipogon ORUFI08G19510 I 0.000
ORUFI09G13050 Oryza rufipogon ORUFI09G13050 I 0.000
Pavir.Da02253 Panicum virgatum Pavir.Da02253 I 0.000
Pavir.Da02255 Panicum virgatum Pavir.Da02255 I 0.000
Pavir.Fa00698 Panicum virgatum Pavir.Fa00698 I 0.000
Pavir.Ia02217 Panicum virgatum Pavir.Ia02217 I 0.000
Pavir.J12300 Panicum virgatum Pavir.J12300 I 0.000
Pavir.J15564 Panicum virgatum Pavir.J15564 I 0.000
Pavir.J20342 Panicum virgatum Pavir.J20342 I 0.000
Pavir.J26517 Panicum virgatum Pavir.J26517 I 0.000
Pavir.J36719 Panicum virgatum Pavir.J36719 I 0.000
PGSC0003DMG400021423 Solanum tuberosum PGSC0003DMG400021423 I 0.000
PGSC0003DMG400023707 Solanum tuberosum PGSC0003DMG400023707 I 0.000
PGSC0003DMG400025984 Solanum tuberosum PGSC0003DMG400025984 I 0.000
PK17334.1 Cannabis sativa PK17334.1 I 0.000
Pm002327 Prunus mume Pm002327 I 0.000
POPTR_0001s15490 Populus trichocarpa POPTR_0001s15490 I 0.000
POPTR_0001s23680 Populus trichocarpa POPTR_0001s23680 I 0.000
POPTR_0003s07760 Populus trichocarpa POPTR_0003s07760 I 0.000
POPTR_0007s14590 Populus trichocarpa POPTR_0007s14590 I 0.000
POPTR_0009s02850 Populus trichocarpa POPTR_0009s02850 I 0.000
PRUPE_ppa009614mg Prunus persica PRUPE_ppa009614mg I 0.000
SapurV1A.0008s0420 Salix purpurea SapurV1A.0008s0420 I 0.000
SapurV1A.0194s0140 Salix purpurea SapurV1A.0194s0140 I 0.000
SapurV1A.0608s0240 Salix purpurea SapurV1A.0608s0240 I 0.000
SapurV1A.0821s0150 Salix purpurea SapurV1A.0821s0150 I 0.000
SapurV1A.0929s0040 Salix purpurea SapurV1A.0929s0040 I 0.000
SapurV1A.1715s0010 Salix purpurea SapurV1A.1715s0010 I 0.000
Sb01g029000 Sorghum bicolor Sb01g029000 I 0.000
Sb02g026150 Sorghum bicolor Sb02g026150 I 0.000
Sb07g022620 Sorghum bicolor Sb07g022620 I 0.000
Sb10g002740 Sorghum bicolor Sb10g002740 I 0.000
Sb10g002750 Sorghum bicolor Sb10g002750 I 0.000
Si007019m.g Setaria italica Si007019m.g I 0.000
Si007082m.g Setaria italica Si007082m.g I 0.000
Si014954m.g Setaria italica Si014954m.g I 0.000
Si030329m.g Setaria italica Si030329m.g I 0.000
Si036388m.g Setaria italica Si036388m.g I 0.000
Solyc01g090460.2 Solanum lycopersicum Solyc01g090460.2 I 0.000
Solyc02g091930.2 Solanum lycopersicum Solyc02g091930.2 I 0.000
Solyc10g080540.1 Solanum lycopersicum Solyc10g080540.1 I 0.000
TCM_000867 Theobroma cacao TCM_000867 I 0.000
Thhalv10000281m.g Eutrema salsugineum Thhalv10000281m.g I 0.000
Thhalv10025923m.g Eutrema salsugineum Thhalv10025923m.g I 0.000
Traes_5BL_4A3874701 Triticum aestivum Traes_5BL_4A3874701 I 0.000
Traes_6DS_D281B7D32 Triticum aestivum Traes_6DS_D281B7D32 I 0.000
Traes_6DS_F00EB2E01 Triticum aestivum Traes_6DS_F00EB2E01 I 0.000
Traes_6DS_F00EB2E011 Triticum aestivum Traes_6DS_F00EB2E011 I 0.000
TRIUR3_17853 Triticum urartu TRIUR3_17853 I 0.000
VIT_18s0001g08410 Vitis vinifera VIT_18s0001g08410 I 0.000