pbx2 (Gasterosteus aculeatus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSGACG00000013077 T210119_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PBX2
M08134_2.00 		Homo sapiens
NWGAKTGACABN
NVTGTCAMTCWN		 ChIP-seq
Mathelier et al.(2014)
MA1113.1 		0.821 0.930
PBX2
M09165_2.00 		Homo sapiens
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C 		0.821 0.930
Pbx2
M09199_2.00 		Mus musculus
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C 		0.821 0.930
Pbx1
M00513_2.00 		Mus musculus
NNDKANNNN
NNNNTMHNN		 PBM
Berger et al.(2008)
Pbx1_3203 		0.821 0.912
pbx4
M02110_2.00 		Tetraodon nigroviridis
TTGAYGDV
BHCRTCAA		 PBM
Weirauch et al.(2014)
pTH6425 		0.821 0.912
PBX1
M05362_2.00 		Homo sapiens
NTGATKGAYR
YRTCMATCAN		 SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX 		0.821 0.912
PBX1
M05364_2.00 		Homo sapiens
DTGMTKGRYN
NRYCMAKCAH		 SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX 		0.821 0.912
PBX1
M02685_2.00 		Homo sapiens
WWTGATTGATND
HNATCAATCAWW		 SELEX
Mathelier et al.(2014)
MA0070.1 		0.821 0.912
PBX1
M09164_2.00 		Homo sapiens
DGABTGRCRG
CYGYCAVTCH		 Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A 		0.821 0.912
PBX1
M09561_2.00 		Homo sapiens
TGABTGACAGSC
GSCTGTCAVTCA		 Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007 		0.821 0.912
PBX1
M10748_2.00 		Homo sapiens
WTKATTRDT
AHYAATMAW		 Transfac
Matys et al.(2006)
V$PBX1_01 		0.821 0.912
PBX1
M10749_2.00 		Homo sapiens
DNHTTGATTGATKDB
VHMATCAATCAADNH		 Transfac
Matys et al.(2006)
V$PBX1_02 		0.821 0.912
PBX1
M10750_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_03 		0.821 0.912
PBX1
M10751_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_05 		0.821 0.912
PBX1
M10752_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_10 		0.821 0.912
PBX1
M10753_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_Q3 		0.821 0.912
PBX1
M05363_2.00 		Homo sapiens
DTGAKKGAYG
CRTCMMTCAH		 SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX 		0.821 0.912
PBX1
M05365_2.00 		Homo sapiens
MRTCAATCMH
DKGATTGAYK		 SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX 		0.821 0.912
Pbx3
M09205_2.00 		Mus musculus
BBBTGATTGRYNDN
NHNRYCAATCAVVV		 Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A 		0.820 0.912
exd
M06487_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Mathelier et al.(2014)
MA0222.1 		0.777 0.895
exd
M06243_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Zhu et al.(2011)
Exd_Cell_FBgn0000611 		0.777 0.895
exd
M06244_2.00 		Drosophila melanogaster
NWRNWYNAAA
TTTNRWNYWN		 B1H
Zhu et al.(2011)
exd_FlyReg_FBgn0000611 		0.777 0.895
exd
M06245_2.00 		Drosophila melanogaster
NDTGAYRW
WYRTCAHN		 B1H
Zhu et al.(2011)
exd_SOLEXA_2_FBgn0000611 		0.777 0.895
exd
M06246_2.00 		Drosophila melanogaster
NNDTGAYR
YRTCAHNN		 B1H
Zhu et al.(2011)
Exd_SOLEXA_FBgn0000611 		0.777 0.895
PBX4
M00277_2.00 		Homo sapiens
NNDDWHDNNN
NNNHDWHHNN		 PBM
Barrera et al.(2016)
PBX4_REF 		0.770 0.842
PBX4
M10649_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX4_01 		0.770 0.842
CBG10835
M01243_2.00 		Caenorhabditis briggsae
NNTKAYDNN
NNHRTMANN		 PBM
Lambert et al.(2019)
pTH11444 		0.703 0.579
PBX4
M00276_2.00 		Homo sapiens
NYTAATTADNN
NNHTAATTARN		 PBM
Barrera et al.(2016)
PBX4_R215Q 		0.632 0.825
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000017296 Homeodomain 244 303

Links

Other Homeodomain family TFs
Other Gasterosteus aculeatus TFs

432 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R012398 Calypte anna Aan_R012398 I
Afo_R003629 Aptenodytes forsteri Afo_R003629 I
Alligator_sinensis_CCG005176.1 Alligator sinensis Alligator_sinensis_CCG005176.1 I
Brh_R002139 Buceros rhinoceros Brh_R002139 I
Cmyd_10009373 Chelonia mydas Cmyd_10009373 I
ENSAMEG00000019054 Ailuropoda melanoleuca ENSAMEG00000019054 I
ENSAMXG00000024924 Astyanax mexicanus ENSAMXG00000024924 I
ENSAMXG00000025528 Astyanax mexicanus ENSAMXG00000025528 I
ENSAPLG00000002204 Anas platyrhynchos ENSAPLG00000002204 I
ENSBTAP00000023618-D1 Bos grunniens ENSBTAP00000023618-D1 I
ENSCPOG00000010552 Cavia porcellus ENSCPOG00000010552 I
ENSCSAG00000018511 Chlorocebus sabaeus ENSCSAG00000018511 I
ENSDNOG00000045269 Dasypus novemcinctus ENSDNOG00000045269 I
ENSGACG00000006400 Gasterosteus aculeatus ENSGACG00000006400 I
ENSGMOG00000008894 Gadus morhua ENSGMOG00000008894 I
ENSLAFG00000017043 Loxodonta africana ENSLAFG00000017043 I
ENSLOCG00000008217 Lepisosteus oculatus ENSLOCG00000008217 I
ENSLOCG00000018299 Lepisosteus oculatus ENSLOCG00000018299 I
ENSMPUG00000019999 Mustela putorius furo ENSMPUG00000019999 I
ENSNLEG00000018673 Nomascus leucogenys ENSNLEG00000018673 I
ENSOARG00000003352 Ovis aries ENSOARG00000003352 I
ENSONIG00000018891 Oreochromis niloticus ENSONIG00000018891 I
ENSONIG00000021308 Oreochromis niloticus ENSONIG00000021308 I
ENSORLG00000016478 Oryzias latipes ENSORLG00000016478 I
ENSP00000297689 Macaca fascicularis ENSP00000297689 I
ENSPANG00000006675 Papio anubis ENSPANG00000006675 I
ENSPFOG00000023063 Poecilia formosa ENSPFOG00000023063 I
ENSPPYG00000019368 Pongo abelii ENSPPYG00000019368 I
ENSPSIG00000011205 Pelodiscus sinensis ENSPSIG00000011205 I
ENSSHAG00000008103 Sarcophilus harrisii ENSSHAG00000008103 I
ENSSTOG00000028188 Ictidomys tridecemlineatus ENSSTOG00000028188 I
ENSTNIG00000008333 Tetraodon nigroviridis ENSTNIG00000008333 I
ENSXMAG00000019943 Xiphophorus maculatus ENSXMAG00000019943 I
Gfo_R004089 Geospiza fortis Gfo_R004089 I
Myotis_brandtii_NFIL3_10016869 Myotis brandtii Myotis_brandtii_NFIL3_10016869 I
nfil3 Danio rerio ENSDARG00000042977 I
NFIL3 Felis catus ENSFCAG00000013483 I
NFIL3 Callithrix jacchus ENSCJAG00000005728 I
NFIL3 Choloepus hoffmanni ENSCHOG00000006006 I
NFIL3 Canis familiaris ENSCAFG00000002169 I
NFIL3 Bos taurus ENSBTAG00000017763 I
NFIL3 Tursiops truncatus ENSTTRG00000014041 I
nfil3 Xenopus tropicalis XB-GENE-479624 I
NFIL3 Taeniopygia guttata ENSTGUG00000000417 I
NFIL3 Myotis lucifugus ENSMLUG00000010449 I
NFIL3 Sus scrofa ENSSSCG00000009592 I
NFIL3 Meleagris gallopavo ENSMGAG00000016056 I
NFIL3 Macaca mulatta ENSMMUG00000023257 I
NFIL3 Monodelphis domestica ENSMODG00000025436 I
NFIL3 Gorilla gorilla ENSGGOG00000001317 I
Nfil3 Mus musculus ENSMUSG00000056749 D
NFIL3 Gallus gallus ENSGALG00000015209 I
NFIL3 Homo sapiens ENSG00000165030 D
NFIL3 Oryctolagus cuniculus ENSOCUG00000000145 I
NFIL3 Otolemur garnettii ENSOGAG00000011750 I
NFIL3 Anolis carolinensis ENSACAG00000000915 I
NFIL3 Pan troglodytes ENSPTRG00000021100 I
NFIL3 Pteropus vampyrus ENSPVAG00000004801 I
Nfil3 Rattus norvegicus ENSRNOG00000011668 I
NFIL3 Tupaia belangeri ENSTBEG00000000787 I
nfil3.L Xenopus laevis XB-GENE-865288 I
Ogr15166 Ophisaurus gracilis Ogr15166 I
Pvit_13069 Pogona vitticeps Pvit_13069 I
Tal_R002924 Tyto alba Tal_R002924 I