CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ENSLACG00000017423 *(Latimeria chalumnae)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	ENSLACG00000017423	T210930_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Hoxa13 M00473_2.00	Mus musculus	NTTWAYDRN	NYHRTWAAN	PBM Berger et al.(2008) Hoxa13_3126	0.867	1.000
HOXA13 M03098_2.00	Homo sapiens	DKTTTATKRS	SYMATAAAMH	SELEX Jolma et al.(2013) HOXA13_1	0.867	1.000
HOXA13 M03099_2.00	Homo sapiens	NCTCGTAAAHN	NDTTTACGAGN	SELEX Jolma et al.(2013) HOXA13_2	0.867	1.000
HOXA13 M03100_2.00	Homo sapiens	DKTTTATKRS	SYMATAAAMH	SELEX Jolma et al.(2013) HOXA13_3	0.867	1.000
HOXA13 M03101_2.00	Homo sapiens	NCTCGTAAAAH	DTTTTACGAGN	SELEX Jolma et al.(2013) HOXA13_4	0.867	1.000
HOXA13 M04977_2.00	Homo sapiens	DTTTTATKGGB	VCCMATAAAAH	SELEX Yin et al.(2017) HOXA13_eDBD_HT-SELEX_1	0.867	1.000
HOXA13 M04978_2.00	Homo sapiens	NCTCGTAAAHN	NDTTTACGAGN	SELEX Yin et al.(2017) HOXA13_eDBD_HT-SELEX_2	0.867	1.000
HOXA13 M04981_2.00	Homo sapiens	DTTTTATKRSN	NSYMATAAAAH	SELEX Yin et al.(2017) HOXA13_FL_HT-SELEX_1	0.867	1.000
HOXA13 M04982_2.00	Homo sapiens	NCTCGTAAAWH	DWTTTACGAGN	SELEX Yin et al.(2017) HOXA13_FL_HT-SELEX_2	0.867	1.000
HOXA13 M09134_2.00	Homo sapiens	VDTWTWATKGS	SCMATWAWAHB	Misc Kulakovskiy et al.(2013) HXA13_HUMAN.H11MO.0.C	0.867	1.000
Hoxa13 M09202_2.00	Mus musculus	VDTWTWATKGS	SCMATWAWAHB	Misc Kulakovskiy et al.(2013) HXA13_MOUSE.H11MO.0.C	0.867	1.000
HOXA13 M10653_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXA13_01	0.867	1.000
HOXA13 M10654_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXA13_02	0.867	1.000
HOXA13 M04979_2.00	Homo sapiens	DTTTTATTRSN	NSYAATAAAAH	SELEX Yin et al.(2017) HOXA13_eDBD_Methyl-HT-SELEX_1	0.867	1.000
HOXA13 M04980_2.00	Homo sapiens	NCTCGTAAAHN	NDTTTACGAGN	SELEX Yin et al.(2017) HOXA13_eDBD_Methyl-HT-SELEX_2	0.867	1.000
HOXA13 M04983_2.00	Homo sapiens	DKTTTATTGBN	NVCAATAAAMH	SELEX Yin et al.(2017) HOXA13_FL_Methyl-HT-SELEX_1	0.867	1.000
HOXA13 M04984_2.00	Homo sapiens	NCTCGTAAAWH	DWTTTACGAGN	SELEX Yin et al.(2017) HOXA13_FL_Methyl-HT-SELEX_2	0.867	1.000
Hoxc13 M00389_2.00	Mus musculus	NTTWAYDRNN	NNYHRTWAAN	PBM Berger et al.(2008) Hoxc13_3127	0.862	0.930
HOXC13 M03129_2.00	Homo sapiens	NTTTTATTRS	SYAATAAAAN	SELEX Jolma et al.(2013) HOXC13_1	0.862	0.930
HOXC13 M03130_2.00	Homo sapiens	NCTCGTAAAAH	DTTTTACGAGN	SELEX Jolma et al.(2013) HOXC13_2	0.862	0.930
HOXC13 M05072_2.00	Homo sapiens	RKTTTATKGSN	NSCMATAAAMY	SELEX Yin et al.(2017) HOXC13_eDBD_HT-SELEX_1	0.862	0.930
HOXC13 M05073_2.00	Homo sapiens	BCTCGTAAAMH	DKTTTACGAGV	SELEX Yin et al.(2017) HOXC13_eDBD_HT-SELEX_2	0.862	0.930
HOXC13 M10680_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXC13_Q2	0.862	0.930
HOXC13 M05074_2.00	Homo sapiens	BCTCGTAAAAH	DTTTTACGAGV	SELEX Yin et al.(2017) HOXC13_eDBD_Methyl-HT-SELEX	0.862	0.930
hoxd13a M02081_2.00	Danio rerio	WTTTATDR	YHATAAAW	PBM Weirauch et al.(2014) pTH6143	0.836	0.842
HOXD13 M00299_2.00	Homo sapiens	NTTWAYDDN	NHHRTWAAN	PBM Barrera et al.(2016) HOXD13_REF	0.834	0.895
Hoxd13 M00394_2.00	Mus musculus	NWTHRYDDN	NHHRYDAWN	PBM Berger et al.(2008) Hoxd13_2356	0.834	0.895
HOXD13 M03141_2.00	Homo sapiens	DTTTTATKRS	SYMATAAAAH	SELEX Jolma et al.(2013) HOXD13_1	0.834	0.895
HOXD13 M03142_2.00	Homo sapiens	BCTCGTAAAAH	DTTTTACGAGV	SELEX Jolma et al.(2013) HOXD13_2	0.834	0.895
Hoxd13 M03247_2.00	Mus musculus	DKTTTATTRS	SYAATAAAMH	SELEX Jolma et al.(2013) Hoxd13_1	0.834	0.895
Hoxd13 M03248_2.00	Mus musculus	DDTTTAYKAGN	NCTMRTAAAHH	SELEX Jolma et al.(2013) Hoxd13_2	0.834	0.895
HOXD13 M05122_2.00	Homo sapiens	GKTTTATKGSS	SSCMATAAAMC	SELEX Yin et al.(2017) HOXD13_eDBD_HT-SELEX_1	0.834	0.895
HOXD13 M05123_2.00	Homo sapiens	BCTCGTAAAMH	DKTTTACGAGV	SELEX Yin et al.(2017) HOXD13_eDBD_HT-SELEX_2	0.834	0.895
HOXD13 M10689_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXD13_Q6	0.834	0.895
HOXD13 M00295_2.00	Homo sapiens	NTTWAYDDN	NHHRTWAAN	PBM Barrera et al.(2016) HOXD13_N298S	0.834	0.895
HOXD13 M05124_2.00	Homo sapiens	DDTTTATTRBB	VVYAATAAAHH	SELEX Yin et al.(2017) HOXD13_eDBD_Methyl-HT-SELEX_1	0.834	0.895
HOXD13 M05125_2.00	Homo sapiens	VCTCGTAAAAH	DTTTTACGAGB	SELEX Yin et al.(2017) HOXD13_eDBD_Methyl-HT-SELEX_2	0.834	0.895
HOXD13 M00300_2.00	Homo sapiens	WTTTATDR	YHATAAAW	PBM Barrera et al.(2016) HOXD13_S316C	0.834	0.877
HOXD13 M00293_2.00	Homo sapiens	NTTWAYDDNN	NNHHRTWAAN	PBM Barrera et al.(2016) HOXD13_I297V	0.834	0.877
HOXD13 M00298_2.00	Homo sapiens	NTTWAYDDN	NHHRTWAAN	PBM Barrera et al.(2016) HOXD13_R306W	0.826	0.877
HOXD13 M00294_2.00	Homo sapiens	THGTWAAW	WTTWACDA	PBM Barrera et al.(2016) HOXD13_I322L	0.816	0.877
HOXB13 M02092_2.00	Homo sapiens	NTTWAYDDNN	NNHHRTWAAN	PBM Weirauch et al.(2014) pTH5808	0.709	0.842
Hoxb13 M00505_2.00	Mus musculus	NTTWAYDDNN	NNHHRTWAAN	PBM Berger et al.(2008) Hoxb13_3479	0.709	0.842
HOXB13 M03175_2.00	Homo sapiens	DTTTTATKGG	CCMATAAAAH	SELEX Jolma et al.(2013) HOXB13_1	0.709	0.842
HOXB13 M03176_2.00	Homo sapiens	BCTCGTAAAAH	DTTTTACGAGV	SELEX Jolma et al.(2013) HOXB13_2	0.709	0.842
HOXB13 M05201_2.00	Homo sapiens	DTTTTATKGGN	NCCMATAAAAH	SELEX Yin et al.(2017) HOXB13_eDBD_HT-SELEX_1	0.709	0.842
HOXB13 M05202_2.00	Homo sapiens	NCTCGTAAAHH	DDTTTACGAGN	SELEX Yin et al.(2017) HOXB13_eDBD_HT-SELEX_2	0.709	0.842
HOXB13 M09149_2.00	Homo sapiens	TTTTATDRSN	NSYHATAAAA	Misc Kulakovskiy et al.(2013) HXB13_HUMAN.H11MO.0.A	0.709	0.842
HOXB13 M05203_2.00	Homo sapiens	NCTCGTAAAAH	DTTTTACGAGN	SELEX Yin et al.(2017) HOXB13_eDBD_Methyl-HT-SELEX	0.709	0.842
cad M03780_2.00	Drosophila melanogaster	NKTTTATKRCHB	VDGYMATAAAMN	SELEX Nitta et al.(2015) cad_1	0.611	0.544
cad M03781_2.00	Drosophila melanogaster	NDTTTATKRCHN	NDGYMATAAAHN	SELEX Nitta et al.(2015) cad_2	0.611	0.544
cad M03782_2.00	Drosophila melanogaster	NDTTTATKRCNB	VNGYMATAAAHN	SELEX Nitta et al.(2015) cad_3	0.611	0.544
cad M03783_2.00	Drosophila melanogaster	NNTTTAYGRYNN	NNRYCRTAAANN	SELEX Nitta et al.(2015) cad_4	0.611	0.544
cad M06223_2.00	Drosophila melanogaster	HTTWATTR	YAATWAAD	B1H Zhu et al.(2011) Cad_Cell_FBgn0000251	0.611	0.544
cad M06224_2.00	Drosophila melanogaster	RBYVDAAMV	BKTTHBRVY	B1H Zhu et al.(2011) cad_FlyReg_FBgn0000251	0.611	0.544
cad M06225_2.00	Drosophila melanogaster	NTTWATKR	YMATWAAN	B1H Zhu et al.(2011) Cad_SOLEXA_FBgn0000251	0.611	0.544
cad M08420_2.00	Drosophila melanogaster	DTTTTATKRYY	RRYMATAAAAH	ChIP-chip Mathelier et al.(2014) MA0216.2	0.611	0.544
cad M09580_2.00	Drosophila melanogaster	DTTTAYGRYN	NRYCRTAAAH	Misc Heinz et al.(2010) Drosophila-Embryos_modEncode	0.611	0.544
cad M09674_2.00	Drosophila melanogaster	HTTTATKRBY	RVYMATAAAD	Misc Kulakovskiy et al.(2009) cad	0.611	0.544
cad M10783_2.00	Drosophila melanogaster	Transfac license required	Transfac license required	Transfac Matys et al.(2006) I$CAD_Q6	0.611	0.544
HOXD13 M00296_2.00	Homo sapiens	GKATAAAH	DTTTATMC	PBM Barrera et al.(2016) HOXD13_Q325K	0.601	0.877
HOXD13 M00297_2.00	Homo sapiens	NWTWRKNNNN	NNNNMYWAWN	PBM Barrera et al.(2016) HOXD13_Q325R	0.601	0.877
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSLACP00000019815	Homeodomain	230	286	RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK

Links
Other Homeodomain family TFs
Other *Latimeria chalumnae* TFs

275 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
21608_YPL177C	Saccharomyces mikatae	21608_YPL177C	I
22207_YPL177C	Saccharomyces paradoxus	22207_YPL177C	I
24630_YPL177C	Saccharomyces bayanus	24630_YPL177C	I
8079_YGL096W	Saccharomyces bayanus	8079_YGL096W	I
8695_YGL096W	Saccharomyces paradoxus	8695_YGL096W	I
AACERI_AaceriAFL049C	Saccharomycetaceae sp ashbya aceri	AACERI_AaceriAFL049C	I
AAEL014550	Aedes aegypti	AAEL014550	I
ADAC004901	Anopheles darlingi	ADAC004901	I
AGOS_AFL049C	Ashbya gossypii	AGOS_AFL049C	I
AUEXF2481DRAFT_26059	Aureobasidium subglaciale	AUEXF2481DRAFT_26059	I
BAUCODRAFT_212345	Baudoinia compniacensis	BAUCODRAFT_212345	I
CAGL0C01551g	Candida glabrata	CAGL0C01551g	I
CAOG_08013	Capsaspora owczarzaki	CAOG_08013	I
CUP9	Saccharomyces cerevisiae	YPL177C	D
DI09_143p10	Microsporidia sp	DI09_143p10	I
DOTSEDRAFT_23295	Dothistroma septosporum	DOTSEDRAFT_23295	I
Ecym_2247	Eremothecium cymbalariae	Ecym_2247	I
ENSETEG00000011891	Echinops telfairi	ENSETEG00000011891	I
ENSPVAG00000016033	Pteropus vampyrus	ENSPVAG00000016033	I
fgenesh1_pg.C_chr_3000478	Mycosphaerella graminicola	fgenesh1_pg.C_chr_3000478	I
HPODL_01870	Ogataea parapolymorpha	HPODL_01870	I
KAFR_0A04370	Kazachstania africana	KAFR_0A04370	I
KLLA0_B10450g	Kluyveromyces lactis	KLLA0_B10450g	I
KNAG_0F02210	Kazachstania naganishii	KNAG_0F02210	I
KNAG_0M00500	Kazachstania naganishii	KNAG_0M00500	I
Kpol_1036p56	Vanderwaltozyma polyspora	Kpol_1036p56	I
KUCA_T00004797001	Kuraishia capsulata	KUCA_T00004797001	I
M437DRAFT_13662	Aureobasidium melanogenum	M437DRAFT_13662	I
M438DRAFT_396225	Aureobasidium pullulans	M438DRAFT_396225	I
Mycgr3G91768	Zymoseptoria tritici	Mycgr3G91768	I
NCAS_0H01130	Naumovozyma castellii	NCAS_0H01130	I
NDAI_0F02170	Naumovozyma dairenensis	NDAI_0F02170	I
NDAI_0I01320	Naumovozyma dairenensis	NDAI_0I01320	I
nRc.2.0.1.g06302	Romanomermis culicivorax	nRc.2.0.1.g06302	I
O9G_002924	Rozella allomycis	O9G_002924	I
PAS_chr3_0590	Komagataella pastoris	PAS_chr3_0590	I
PTSG_05211	Salpingoeca rosetta	PTSG_05211	I
Scas_Contig597.15	Saccharomyces castellii	Scas_Contig597.15	I
SEPMUDRAFT_148705	Sphaerulina musiva	SEPMUDRAFT_148705	I
SKUD_191904	Saccharomyces kudriavzevii	SKUD_191904	I
SU7_3505	Saccharomyces arboricola	SU7_3505	I
TBLA_0C03740	Tetrapisispora blattae	TBLA_0C03740	I
TDEL_0F01810	Torulaspora delbrueckii	TDEL_0F01810	I
TOS8	Saccharomyces cerevisiae	YGL096W	D
TPHA_0B02580	Tetrapisispora phaffii	TPHA_0B02580	I
XP_002492817.1	Pichia pastoris	XP_002492817.1	I
ZBAI_04266	Zygosaccharomyces bailii	ZBAI_04266	I
ZBAI_07775	Zygosaccharomyces bailii	ZBAI_07775	I
ZYRO0G22044g	Zygosaccharomyces rouxii	ZYRO0G22044g	I

ENSLACG00000017423 (Latimeria chalumnae) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

275 Related TFs

ENSLACG00000017423 **(Latimeria chalumnae)
Homeodomain**