CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ENSMMUG00000011558 *(Macaca mulatta)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	ENSMMUG00000011558	T211933_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Cdx1 M00427_2.00	Mus musculus	NWWATDRNN	NNYHATWWN	PBM Berger et al.(2008) Cdx1_2245	0.867	1.000
CDX1 M03115_2.00	Homo sapiens	NTTTATKRB	VYMATAAAN	SELEX Jolma et al.(2013) CDX1_1	0.867	1.000
CDX1 M05018_2.00	Homo sapiens	VKTTTATKRCN	NGYMATAAAMB	SELEX Yin et al.(2017) CDX1_eDBD_HT-SELEX	0.867	1.000
CDX1 M09140_2.00	Homo sapiens	HCWTAAAD	HTTTAWGD	Misc Kulakovskiy et al.(2013) CDX1_HUMAN.H11MO.0.C	0.867	1.000
Cdx1 M09186_2.00	Mus musculus	HCWTAAAD	HTTTAWGD	Misc Kulakovskiy et al.(2013) CDX1_MOUSE.H11MO.0.C	0.867	1.000
CDX1 M10670_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX1_Q4	0.867	1.000
CDX1 M10671_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX1_Q5	0.867	1.000
CDX1 M05019_2.00	Homo sapiens	NGTCGTAAAWB	VWTTTACGACN	SELEX Yin et al.(2017) CDX1_eDBD_Methyl-HT-SELEX	0.867	1.000
CDX1 M10761_2.00	Gallus gallus	BDBWAAK	MTTWVHV	Transfac Matys et al.(2006) V$CDXA_01	0.855	0.965
CDX1 M10762_2.00	Gallus gallus	WWWWMYR	YRKWAWW	Transfac Matys et al.(2006) V$CDXA_02	0.855	0.965
CDX2 M03196_2.00	Homo sapiens	KTTTATKRB	VYMATAAAM	SELEX Jolma et al.(2013) CDX2_1	0.855	0.947
CDX2 M05248_2.00	Homo sapiens	NDTWAYRRYN	NRYYRTWAHN	SELEX Yin et al.(2017) CDX2_eDBD_HT-SELEX_1	0.855	0.947
CDX2 M05249_2.00	Homo sapiens	NDWWATKRB	VYMATWWHN	SELEX Yin et al.(2017) CDX2_eDBD_HT-SELEX_2	0.855	0.947
CDX2 M08131_2.00	Homo sapiens	YTTTATKRCHB	VDGYMATAAAR	ChIP-seq Mathelier et al.(2014) MA0465.1	0.855	0.947
CDX2 M09152_2.00	Homo sapiens	DTTBATKGCHNB	VNDGCMATVAAH	Misc Kulakovskiy et al.(2013) CDX2_HUMAN.H11MO.0.A	0.855	0.947
CDX2 M10723_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX2_Q5_01	0.855	0.947
CDX2 M10724_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX2_Q5_02	0.855	0.947
CDX2 M10725_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX2_Q5	0.855	0.947
CDX2 M10726_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX2_Q6	0.855	0.947
CDX2 M05250_2.00	Homo sapiens	NRTCGTAWHBNN	NNVDWTACGAYN	SELEX Yin et al.(2017) CDX2_eDBD_Methyl-HT-SELEX	0.855	0.947
Cdx2 M00447_2.00	Mus musculus	NWWAYDRNN	NNYHRTWWN	PBM Berger et al.(2008) Cdx2_4272	0.850	0.947
Cdx2 M09193_2.00	Mus musculus	BTTTATKRCYBY	RVRGYMATAAAV	Misc Kulakovskiy et al.(2013) CDX2_MOUSE.H11MO.0.A	0.850	0.947
Cdx2 M09572_2.00	Mus musculus	NTTTTATKRC	GYMATAAAAN	Misc Heinz et al.(2010) mES-Cdx2_GSE14586	0.850	0.947
cad M03780_2.00	Drosophila melanogaster	NKTTTATKRCHB	VDGYMATAAAMN	SELEX Nitta et al.(2015) cad_1	0.840	0.860
cad M03781_2.00	Drosophila melanogaster	NDTTTATKRCHN	NDGYMATAAAHN	SELEX Nitta et al.(2015) cad_2	0.840	0.860
cad M03782_2.00	Drosophila melanogaster	NDTTTATKRCNB	VNGYMATAAAHN	SELEX Nitta et al.(2015) cad_3	0.840	0.860
cad M03783_2.00	Drosophila melanogaster	NNTTTAYGRYNN	NNRYCRTAAANN	SELEX Nitta et al.(2015) cad_4	0.840	0.860
cad M06223_2.00	Drosophila melanogaster	HTTWATTR	YAATWAAD	B1H Zhu et al.(2011) Cad_Cell_FBgn0000251	0.840	0.860
cad M06224_2.00	Drosophila melanogaster	RBYVDAAMV	BKTTHBRVY	B1H Zhu et al.(2011) cad_FlyReg_FBgn0000251	0.840	0.860
cad M06225_2.00	Drosophila melanogaster	NTTWATKR	YMATWAAN	B1H Zhu et al.(2011) Cad_SOLEXA_FBgn0000251	0.840	0.860
cad M08420_2.00	Drosophila melanogaster	DTTTTATKRYY	RRYMATAAAAH	ChIP-chip Mathelier et al.(2014) MA0216.2	0.840	0.860
cad M09580_2.00	Drosophila melanogaster	DTTTAYGRYN	NRYCRTAAAH	Misc Heinz et al.(2010) Drosophila-Embryos_modEncode	0.840	0.860
cad M09674_2.00	Drosophila melanogaster	HTTTATKRBY	RVYMATAAAD	Misc Kulakovskiy et al.(2009) cad	0.840	0.860
cad M10783_2.00	Drosophila melanogaster	Transfac license required	Transfac license required	Transfac Matys et al.(2006) I$CAD_Q6	0.840	0.860
Q70LF3_ARTSF M02211_2.00	Artemia franciscana	BTAATTAB	VTAATTAV	PBM Weirauch et al.(2014) pTH5553	0.834	0.895
Cdx4 M09197_2.00	Mus musculus	WGATTTATDRBH	DVYHATAAATCW	Misc Kulakovskiy et al.(2013) CDX4_MOUSE.H11MO.0.A	0.831	0.912
CDX4 M05129_2.00	Homo sapiens	VKTTTATKRCH	DGYMATAAAMB	SELEX Yin et al.(2017) CDX4_FL_HT-SELEX	0.831	0.895
CDX4 M05130_2.00	Homo sapiens	BGTCGTAAAHN	NDTTTACGACV	SELEX Yin et al.(2017) CDX4_FL_Methyl-HT-SELEX_1	0.831	0.895
CDX4 M05131_2.00	Homo sapiens	VKTTTATKGCN	NGCMATAAAMB	SELEX Yin et al.(2017) CDX4_FL_Methyl-HT-SELEX_2	0.831	0.895
pal-1 M02183_2.00	Caenorhabditis elegans	GYAATWAA	TTWATTRC	PBM Weirauch et al.(2014) pTH6016	0.650	0.719
Q9GP48_9TURB M02217_2.00	Discocelis tigrina	DTAATTAB	VTAATTAH	PBM Weirauch et al.(2014) pTH6515	0.641	0.737
Q24782_9CNID M02206_2.00	Eleutheria dichotoma	TTAATTAA	TTAATTAA	PBM Weirauch et al.(2014) pTH5486	0.613	0.579
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSMMUP00000015167	Homeodomain	155	211	DKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERK

Links
Other Homeodomain family TFs
Other *Macaca mulatta* TFs

317 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Afo_R002601	Aptenodytes forsteri	Afo_R002601	N	0.000
Alligator_sinensis_CCG009248.1	Alligator sinensis	Alligator_sinensis_CCG009248.1	N	0.000
Brh_R006725	Buceros rhinoceros	Brh_R006725	N	0.000
Cmyd_10007742	Chelonia mydas	Cmyd_10007742	N	0.000
ENSACAG00000007731	Anolis carolinensis	ENSACAG00000007731	N	0.000
ENSAMEG00000019898	Ailuropoda melanoleuca	ENSAMEG00000019898	N	0.000
ENSAPLG00000002179	Anas platyrhynchos	ENSAPLG00000002179	N	0.000
ENSFALG00000007449	Ficedula albicollis	ENSFALG00000007449	N	0.000
ENSGALG00000005975	Gallus gallus	ENSGALG00000005975	N	0.000
ENSLACG00000016046	Latimeria chalumnae	ENSLACG00000016046	N	0.000
ENSLOCG00000003895	Lepisosteus oculatus	ENSLOCG00000003895	N	0.000
ENSMODG00000025038	Monodelphis domestica	ENSMODG00000025038	N	0.000
ENSNLEG00000015447	Nomascus leucogenys	ENSNLEG00000015447	N	0.000
ENSONIG00000009552	Oreochromis niloticus	ENSONIG00000009552	N	0.000
ENSP00000379054	Macaca fascicularis	ENSP00000379054	N	0.000
ENSP00000379054-D1	Bos grunniens	ENSP00000379054-D1	N	0.000
ENSPFOG00000004161	Poecilia formosa	ENSPFOG00000004161	N	0.000
ENSSHAG00000015538	Sarcophilus harrisii	ENSSHAG00000015538	N	0.000
ENSSSCG00000010373	Sus scrofa	ENSSSCG00000010373	N	0.000
ENSSTOG00000015147	Ictidomys tridecemlineatus	ENSSTOG00000015147	N	0.000
ENSTGUG00000008050	Taeniopygia guttata	ENSTGUG00000008050	N	0.000
ENSXMAG00000014518	Xiphophorus maculatus	ENSXMAG00000014518	N	0.000
Gfo_R002431	Geospiza fortis	Gfo_R002431	N	0.000
prdm8	Oryzias latipes	ENSORLG00000008745	N	0.000
prdm8	Gasterosteus aculeatus	ENSGACG00000007142	N	0.000
prdm8	Tetraodon nigroviridis	ENSTNIG00000016524	N	0.000
prdm8	Takifugu rubripes	ENSTRUG00000012560	N	0.000
ZNF488	Tupaia belangeri	ENSTBEG00000016364	N	0.000
ZNF488	Otolemur garnettii	ENSOGAG00000001742	N	0.000
ZNF488	Homo sapiens	ENSG00000265763	N	0.000
ZNF488	Felis catus	ENSFCAG00000008960	N	0.000
ZNF488	Equus caballus	ENSECAG00000004188	N	0.000
ZNF488	Cavia porcellus	ENSCPOG00000000536	N	0.000
ZNF488	Ornithorhynchus anatinus	ENSOANG00000015412	N	0.000
ZNF488	Meleagris gallopavo	ENSMGAG00000016885	N	0.000
ZNF488	Myotis lucifugus	ENSMLUG00000030552	N	0.000

ENSMMUG00000011558 (Macaca mulatta) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

317 Related TFs

ENSMMUG00000011558 **(Macaca mulatta)
Homeodomain**