PBX2 (Sus scrofa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSSSCG00000001438 T215770_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PBX2
M08134_2.00 		Homo sapiens
NWGAKTGACABN
NVTGTCAMTCWN		 ChIP-seq
Mathelier et al.(2014)
MA1113.1 		0.867 1.000
PBX2
M09165_2.00 		Homo sapiens
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C 		0.867 1.000
Pbx2
M09199_2.00 		Mus musculus
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C 		0.867 1.000
pbx4
M02110_2.00 		Tetraodon nigroviridis
TTGAYGDV
BHCRTCAA		 PBM
Weirauch et al.(2014)
pTH6425 		0.867 0.982
Pbx1
M00513_2.00 		Mus musculus
NNDKANNNN
NNNNTMHNN		 PBM
Berger et al.(2008)
Pbx1_3203 		0.867 0.965
PBX1
M05362_2.00 		Homo sapiens
NTGATKGAYR
YRTCMATCAN		 SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX 		0.867 0.965
PBX1
M05364_2.00 		Homo sapiens
DTGMTKGRYN
NRYCMAKCAH		 SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX 		0.867 0.965
PBX1
M02685_2.00 		Homo sapiens
WWTGATTGATND
HNATCAATCAWW		 SELEX
Mathelier et al.(2014)
MA0070.1 		0.867 0.965
PBX1
M09164_2.00 		Homo sapiens
DGABTGRCRG
CYGYCAVTCH		 Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A 		0.867 0.965
PBX1
M09561_2.00 		Homo sapiens
TGABTGACAGSC
GSCTGTCAVTCA		 Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007 		0.867 0.965
PBX1
M10748_2.00 		Homo sapiens
WTKATTRDT
AHYAATMAW		 Transfac
Matys et al.(2006)
V$PBX1_01 		0.867 0.965
PBX1
M10749_2.00 		Homo sapiens
DNHTTGATTGATKDB
VHMATCAATCAADNH		 Transfac
Matys et al.(2006)
V$PBX1_02 		0.867 0.965
PBX1
M10750_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_03 		0.867 0.965
PBX1
M10751_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_05 		0.867 0.965
PBX1
M10752_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_10 		0.867 0.965
PBX1
M10753_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_Q3 		0.867 0.965
PBX1
M05363_2.00 		Homo sapiens
DTGAKKGAYG
CRTCMMTCAH		 SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX 		0.867 0.965
PBX1
M05365_2.00 		Homo sapiens
MRTCAATCMH
DKGATTGAYK		 SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX 		0.867 0.965
Pbx3
M09205_2.00 		Mus musculus
BBBTGATTGRYNDN
NHNRYCAATCAVVV		 Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A 		0.865 0.965
exd
M06487_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Mathelier et al.(2014)
MA0222.1 		0.822 0.947
exd
M06243_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Zhu et al.(2011)
Exd_Cell_FBgn0000611 		0.822 0.947
exd
M06244_2.00 		Drosophila melanogaster
NWRNWYNAAA
TTTNRWNYWN		 B1H
Zhu et al.(2011)
exd_FlyReg_FBgn0000611 		0.822 0.947
exd
M06245_2.00 		Drosophila melanogaster
NDTGAYRW
WYRTCAHN		 B1H
Zhu et al.(2011)
exd_SOLEXA_2_FBgn0000611 		0.822 0.947
exd
M06246_2.00 		Drosophila melanogaster
NNDTGAYR
YRTCAHNN		 B1H
Zhu et al.(2011)
Exd_SOLEXA_FBgn0000611 		0.822 0.947
PBX4
M00277_2.00 		Homo sapiens
NNDDWHDNNN
NNNHDWHHNN		 PBM
Barrera et al.(2016)
PBX4_REF 		0.815 0.912
PBX4
M10649_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX4_01 		0.815 0.912
CBG10835
M01243_2.00 		Caenorhabditis briggsae
NNTKAYDNN
NNHRTMANN		 PBM
Lambert et al.(2019)
pTH11444 		0.691 0.579
PBX4
M00276_2.00 		Homo sapiens
NYTAATTADNN
NNHTAATTARN		 PBM
Barrera et al.(2016)
PBX4_R215Q 		0.677 0.895
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000001548 Homeodomain 245 304

Links

Other Homeodomain family TFs
Other Sus scrofa TFs

435 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_02576 Capronia coronata A1O1_02576 I
A1O3_05449 Capronia epimyces A1O3_05449 I
A1O5_01242 Cladophialophora psammophila A1O5_01242 I
A1O7_08736 Cladophialophora yegresii A1O7_08736 I
A1O9_12266 Exophiala aquamarina A1O9_12266 I
ACLA_055970 Aspergillus clavatus CADACLAG00005179 I
ACRE_013080 Acremonium chrysogenum ACRE_013080 I
AFUA_4G02940 Aspergillus fumigatus CADAFUAG00001401 I
ANIA_10378 Aspergillus nidulans CADANIAG00009880 D
AOL_s00043g74 Arthrobotrys oligospora AOL_s00043g74 I
ARB_05956 Arthroderma benhamiae ARB_05956 I
ATEG_07901 Aspergillus terreus CADATEAG00000497 I
AUEXF2481DRAFT_4094 Aureobasidium subglaciale AUEXF2481DRAFT_4094 I
BAUCODRAFT_269899 Baudoinia compniacensis BAUCODRAFT_269899 I
BBA_00488 Beauveria bassiana BBA_00488 I
BDDG_07691 Blastomyces dermatitidis BDDG_07691 I
BGHDH14_bgh03757 Blumeria graminis BGHDH14_bgh03757 I
CADAFLAG00008024 Aspergillus flavus CADAFLAG00008024 I
CADANGAG00011236 Aspergillus niger CADANGAG00011236 I
CADAORAG00000177 Aspergillus oryzae CADAORAG00000177 I
CCM_04263 Cordyceps militaris CCM_04263 I
CFIO01_07847 Colletotrichum fioriniae CFIO01_07847 I
CGGC5_1206 Colletotrichum gloeosporioides CGGC5_1206 I
CH063_13592 Colletotrichum higginsianum CH063_13592 I
CIMG_08892 Coccidioides immitis CIMG_08892 I
CMQ_2549 Grosmannia clavigera CMQ_2549 I
Cob_10575 Colletotrichum orbiculare Cob_10575 I
COCC4DRAFT_40407 Bipolaris maydis COCC4DRAFT_40407 I
COCCADRAFT_6984 Bipolaris zeicola COCCADRAFT_6984 I
COCMIDRAFT_33369 Bipolaris oryzae COCMIDRAFT_33369 I
COCSADRAFT_97657 Bipolaris sorokiniana COCSADRAFT_97657 I
COCVIDRAFT_17332 Bipolaris victoriae COCVIDRAFT_17332 I
CPC735_064040 Coccidioides posadasii CPC735_064040 I
CPUR_06057 Claviceps purpurea CPUR_06057 I
CSUB01_02829 Colletotrichum sublineola CSUB01_02829 I
CTHT_0032650 Chaetomium thermophilum CTHT_0032650 I
DRE_06529 Drechslerella stenobrocha DRE_06529 I
EPUS_01825 Endocarpon pusillum EPUS_01825 I
estExt_fgenesh1_pg.C_400021 Mycosphaerella fijiensis estExt_fgenesh1_pg.C_400021 N
estExt_fgenesh1_pm.C_30735 Cryphonectria parasitica estExt_fgenesh1_pm.C_30735 I
EURHEDRAFT_411156 Aspergillus ruber EURHEDRAFT_411156 I
EV44_g4901 Erysiphe necator EV44_g4901 I
e_gw1.00710.230.1 Aspergillus carbonarius e_gw1.00710.230.1 I
F503_08759 Ophiostoma piceae uamh F503_08759 I
FFUJ_04663 Fusarium fujikuroi FFUJ_04663 I
fgenesh1_kg.C_scaffold_5000057 Cochliobolus heterostrophus C5 fgenesh1_kg.C_scaffold_5000057 I
fgenesh1_pg.sca_18_chr2_1_0000729 Nectria haematococca fgenesh1_pg.sca_18_chr2_1_0000729 I
FGRRES_09832 Fusarium graminearum FGRRES_09832 I
FOXG_08221 Fusarium oxysporum FOXG_08221 I
FPSE_10348 Fusarium pseudograminearum FPSE_10348 I
FVEG_06450 Fusarium verticillioides FVEG_06450 I
G647_07711 Cladophialophora carrionii G647_07711 I
GGTG_08387 Gaeumannomyces graminis GGTG_08387 I
GLRG_02817 Colletotrichum graminicola GLRG_02817 I
GSTUM_00012070001 Tuber melanosporum GSTUM_00012070001 I
H072_3248 Dactylellina haptotyla H072_3248 I
H102_02845 Trichophyton rubrum H102_02845 I
H105_02864 Trichophyton soudanense H105_02864 I
HCBG_08448 Histoplasma capsulatum HCBG_08448 I
HMPREF1120_07358 Exophiala dermatitidis HMPREF1120_07358 I
HMPREF1541_04204 Cyphellophora europaea HMPREF1541_04204 I
HMPREF1624_06072 Sporothrix schenckii HMPREF1624_06072 I
LEMA_P075830.1 Leptosphaeria maculans LEMA_P075830.1 I
M437DRAFT_18084 Aureobasidium melanogenum M437DRAFT_18084 I
M7I_6846 Glarea lozoyensis M7I_6846 I
MAC_06402 Metarhizium acridum MAC_06402 I
MAJ_07228 Metarhizium majus MAJ_07228 I
MAM_03966 Metarhizium album MAM_03966 I
MANI_020708 Metarhizium anisopliae MANI_020708 I
MBM_06253 Marssonina brunnea MBM_06253 I
MBR_00309 Metarhizium brunneum MBR_00309 I
MCYG_02695 Microsporum canis MCYG_02695 I
MCYG_02695 Arthroderma otae MCYG_02695 I
MGG_06131 Magnaporthe oryzae MGG_06131 I
MGU_01258 Metarhizium guizhouense MGU_01258 I
MGYG_08430 Microsporum gypseum MGYG_08430 I
MPH_02812 Macrophomina phaseolina MPH_02812 I
MYCFIDRAFT_89211 Pseudocercospora fijiensis MYCFIDRAFT_89211 N
MYCTH_2299061 Myceliophthora thermophila MYCTH_2299061 I
NCU06399 Neurospora crassa NCU06399 D
NechaG76538 Fusarium solani NechaG76538 I
NEUTE1DRAFT_121024 Neurospora tetrasperma NEUTE1DRAFT_121024 I
NFIA_030610 Neosartorya fischeri CADNFIAG00002762 I
OCS_02153 Ophiocordyceps sinensis OCS_02153 I
PAAG_01597 Paracoccidioides sp lutzii PAAG_01597 I
Pc12g13890 Penicillium chrysogenum Pc12g13890 I
PCH_Pc12g13890 Penicillium rubens PCH_Pc12g13890 I
PDE_01297 Penicillium oxalicum PDE_01297 I
PDIP_77620 Penicillium digitatum PDIP_77620 I
PEX1_065040 Penicillium expansum PEX1_065040 I
PFICI_05721 Pestalotiopsis fici PFICI_05721 I
PITC_048290 Penicillium italicum PITC_048290 I
PMAA_006130 Talaromyces marneffei PMAA_006130 I
PMAA_006130 Penicillium marneffei PMAA_006130 I
PODANS_3_4790 Podospora anserina PODANS_3_4790 I
PTRG_08316 Pyrenophora triticirepentis PTRG_08316 I
PTT_12277 Pyrenophora teres PTT_12277 I
PV04_09319 Capronia semiimmersa PV04_09319 I
PV05_00805 Exophiala xenobiotica PV05_00805 I
PV06_05138 Exophiala oligosperma PV06_05138 I
PV07_00488 Cladophialophora immunda PV07_00488 I
PV08_09059 Exophiala spinifera PV08_09059 I
PV09_01316 Verruconis gallopava PV09_01316 I
PV10_04959 Exophiala mesophila PV10_04959 I
PV11_02396 Exophiala sideris PV11_02396 I
S40285_06955 Stachybotrys chlorohalonata S40285_06955 I
S40288_05306 Stachybotrys chartarum S40288_05306 I
SAPIO_CDS7180 Scedosporium apiospermum SAPIO_CDS7180 I
scaffold_3-snap.528.1 Neurospora discreta scaffold_3-snap.528.1 I
SEPMUDRAFT_150066 Sphaerulina musiva SEPMUDRAFT_150066 I
SETTUDRAFT_96438 Setosphaeria turcica SETTUDRAFT_96438 I
SNOG_08036 Stagonospora nodorum SNOG_08036 I
SNOG_08036 Phaeosphaeria nodorum SNOG_08036 I
SPBR_00166 Sporothrix brasiliensis SPBR_00166 I
SS1G_13065 Sclerotinia sclerotiorum SS1G_13065 I
THITE_2115495 Thielavia terrestris THITE_2115495 I
TRIATDRAFT_168746 Trichoderma atroviride TRIATDRAFT_168746 I
TRIREDRAFT_41573 Trichoderma reesei TRIREDRAFT_41573 I
TRIVIDRAFT_192202 Trichoderma virens TRIVIDRAFT_192202 I
TRV_07458 Trichophyton verrucosum TRV_07458 I
TSTA_104870 Talaromyces stipitatus TSTA_104870 I
U727_0043258041 Penicillium solitum U727_0043258041 I
UCRNP2_2391 Neofusicoccum parvum UCRNP2_2391 I
UREG_02800 Uncinocarpus reesii UREG_02800 I
UV8b_314 Ustilaginoidea virens UV8b_314 I
VDAG_08933 Verticillium dahliae VDAG_08933 I
VHEMI03455 Torrubiella hemipterigena VHEMI03455 I
W97_04573 Coniosporium apollinis W97_04573 I
X797_002671 Metarhizium robertsii X797_002671 I
Z517_01506 Fonsecaea pedrosoi Z517_01506 I
Z518_05180 Rhinocladiella mackenziei Z518_05180 I
Z519_08509 Cladophialophora bantiana Z519_08509 I