ENSTNIG00000005045 (Tetraodon nigroviridis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSTNIG00000005045 T216431_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.808 0.543
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.808 0.543
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.808 0.543
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.808 0.543
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.808 0.543
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.808 0.543
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.808 0.543
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.808 0.543
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.808 0.543
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.722 0.413
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.722 0.413
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.722 0.413
SHOX
M02095_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 PBM
Weirauch et al.(2014)
pTH5805 		0.377 1.000
Shox2
M00439_2.00 		Mus musculus
NTAATDDN
NHHATTAN		 PBM
Berger et al.(2008)
Shox2_2641 		0.377 1.000
SHOX
M03232_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
SHOX_1 		0.377 1.000
SHOX2
M03204_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Jolma et al.(2013)
SHOX2_1 		0.377 1.000
Shox2
M03263_2.00 		Mus musculus
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
Shox2_1 		0.377 1.000
SHOX
M05366_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
SHOX_eDBD_HT-SELEX 		0.377 1.000
Shox2
M10772_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SHOX2_05 		0.377 1.000
SHOX
M05367_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
SHOX_eDBD_Methyl-HT-SELEX_1 		0.377 1.000
SHOX
M05368_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
SHOX_eDBD_Methyl-HT-SELEX_2 		0.377 1.000
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000007710 Homeodomain 104 149

Links

Other Homeodomain family TFs
Other Tetraodon nigroviridis TFs

1240 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R000723 Calypte anna Aan_R000723 N 0.000
Afo_R009805 Aptenodytes forsteri Afo_R009805 N 0.000
Alligator_sinensis_CCG000760.1 Alligator sinensis Alligator_sinensis_CCG000760.1 N 0.000
BAZ2A Sus scrofa ENSSSCG00000000403 N 0.000
BAZ2A Vicugna pacos ENSVPAG00000004023 N 0.000
BAZ2A Macaca mulatta ENSMMUG00000019332 N 0.000
BAZ2A Tursiops truncatus ENSTTRG00000002130 N 0.000
Baz2a Mus musculus ENSMUSG00000040054 N 0.000
BAZ2A Tupaia belangeri ENSTBEG00000001463 N 0.000
BAZ2A Loxodonta africana ENSLAFG00000008255 N 0.000
BAZ2A Oryctolagus cuniculus ENSOCUG00000006079 N 0.000
BAZ2A Otolemur garnettii ENSOGAG00000003537 N 0.000
BAZ2A Ochotona princeps ENSOPRG00000001687 N 0.000
BAZ2A Sorex araneus ENSSARG00000009404 N 0.000
Baz2a Rattus norvegicus ENSRNOG00000053881 N 0.000
BAZ2A Pan troglodytes ENSPTRG00000005106 N 0.000
BAZ2A Pteropus vampyrus ENSPVAG00000007618 N 0.000
BAZ2A Gorilla gorilla ENSGGOG00000011580 N 0.000
BAZ2A Homo sapiens ENSG00000076108 N 0.000
BAZ2A Felis catus ENSFCAG00000012029 N 0.000
BAZ2A Echinops telfairi ENSETEG00000010203 N 0.000
BAZ2A Equus caballus ENSECAG00000018243 N 0.000
BAZ2A Dasypus novemcinctus ENSDNOG00000011221 N 0.000
baz2a Xenopus tropicalis XB-GENE-965900 N 0.000
BAZ2A Cavia porcellus ENSCPOG00000006404 N 0.000
BAZ2A Callithrix jacchus ENSCJAG00000010774 N 0.000
BAZ2A Choloepus hoffmanni ENSCHOG00000007335 N 0.000
BAZ2A Canis familiaris ENSCAFG00000000135 N 0.000
BAZ2A Bos taurus ENSBTAG00000017840 N 0.000
BAZ2A Anolis carolinensis ENSACAG00000016700 N 0.000
baz2a.L Xenopus laevis XB-GENE-965905 N 0.000
Cmyd_10002714 Chelonia mydas Cmyd_10002714 N 0.000
ENSAMEG00000004115 Ailuropoda melanoleuca ENSAMEG00000004115 N 0.000
ENSBTAP00000038030-D1 Bos grunniens ENSBTAP00000038030-D1 N 0.000
ENSCSAG00000005062 Chlorocebus sabaeus ENSCSAG00000005062 N 0.000
ENSLACG00000018672 Latimeria chalumnae ENSLACG00000018672 N 0.000
ENSLOCG00000007281 Lepisosteus oculatus ENSLOCG00000007281 N 0.000
ENSMEUG00000002868 Macropus eugenii ENSMEUG00000002868 N 0.000
ENSMLUG00000000546 Myotis lucifugus ENSMLUG00000000546 N 0.000
ENSMPUG00000001495 Mustela putorius furo ENSMPUG00000001495 N 0.000
ENSNLEG00000017462 Nomascus leucogenys ENSNLEG00000017462 N 0.000
ENSOARG00000008407 Ovis aries ENSOARG00000008407 N 0.000
ENSP00000368754 Macaca fascicularis ENSP00000368754 N 0.000
ENSPANG00000021120 Papio anubis ENSPANG00000021120 N 0.000
ENSPPYG00000004667 Pongo abelii ENSPPYG00000004667 N 0.000
ENSSHAG00000000118 Sarcophilus harrisii ENSSHAG00000000118 N 0.000
ENSSTOG00000013452 Ictidomys tridecemlineatus ENSSTOG00000013452 N 0.000
Myotis_brandtii_BAZ2A_10002672 Myotis brandtii Myotis_brandtii_BAZ2A_10002672 N 0.000
Pvit_00723 Pogona vitticeps Pvit_00723 N 0.000